Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 8e-15 >seq5 Length=2463301 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || ||||| | ||| ||| || || ||||||||||| || | | ||| | |||| ||| Sbjct 611205 ACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTTCCATCTTCC 611146 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||||| || ||||| || |||| || ||||| | || | ||||| ||||| | Sbjct 611145 AATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGA 611086 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || ||| ||| || | | |||| || | ||| || || | || ||||| ||| Sbjct 611085 ATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATGGTCTTT 611026 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || |||||||| || || |||||| Sbjct 611025 CCCGTTAGGGTCTTCACGAAAATTTGCATA 610996 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || ||||| | ||| ||| || || ||||| ||||| || | | ||| | |||| ||| Sbjct 610749 ACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCTTCC 610690 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||||| || ||||| || |||| || ||||| | || | ||||| ||||| | Sbjct 610689 AATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGA 610630 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || || || | | |||| || | ||| || || | || || || ||| Sbjct 610629 ATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATAGTCTTT 610570 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| ||||||||||| || || |||||| Sbjct 610569 CCCGTTAGAGTCTTCACGAAAATTTGCATA 610540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632974877424