Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 149 7e-31 >seq5 Length=2463301 Score = 149 bits (164), Expect = 7e-31 Identities = 455/693 (66%), Gaps = 14/693 (2%) Strand=Plus/Minus Query 48117 TATAACTTCTCAAATTCATC-CCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 |||| ||| || ||||| || ||| | || | | |||||| ||||||||||| || || Sbjct 675240 TATAGCTTTTCGAATTCCTCACCCCAAGAC-TCACTTAACCCTGGACATTCATTCGGGCA 675182 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 |||||| | ||||| || || | ||||||||| |||| || | || || | ||| | Sbjct 675181 CATCAAAGTCCAATTCTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATAC 675122 Query 48236 AGCTATAAATAAA-TCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294 ||| ||| | || || |||| ||||||||| || || || ||| | ||| || | Sbjct 675121 AGC-ATAGAAAAGGTCTCTAGCTCTTAGTTCCTCTTTCCCGTGATTTTTACGAAGGTCTA 675063 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 |||| || | ||||| | ||||||||||| | || | ||| | || || | Sbjct 675062 GAAATTCGAAAATATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCCCTTTCTCT 675003 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 | || ||||| |||| |||||| || |||| || | || || | |||||| || | Sbjct 675002 TTCCGCCACCTTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTA 674943 Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATA--ACTTCCACTAG--CTCTTATATTA 48470 || || ||||| || |||||||| ||| || | || | | |||| |||| Sbjct 674942 ACCCGTTGGATATTCCGTTGGTTCCTCTAATGTAGGAGTT----TTGTCCTCTAATATCC 674887 Query 48471 CTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTA 48530 | | | || || ||||| ||| |||| || || || ||| |||| || || Sbjct 674886 TGTACCGCTACTCCAATTCCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTC 674827 Query 48531 TCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGC 48590 || |||| ||||| || |||| || ||||| | || ||||| ||||||||| Sbjct 674826 TCGAAAATACCTTCAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTTGC 674767 Query 48591 GGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGAT 48650 || || || ||||| || || || || | ||| || |||| |||| | || Sbjct 674766 GGTCTGGGCGTCCCAGAATTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTTGAGAC 674707 Query 48651 AACAATTTATATGTTTCAATAACAGAATCTATAT-CCCATTGATGTATACCTATAGATAC 48709 | | | ||| || || | | || | || |||| || || || || || ||||| Sbjct 674706 ATAAGATGATACGTCTCTAGCGCTTTTTCCAGATCCCCAATG-TGGATGCCAATGGATAC 674648 Query 48710 ACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGA 48769 | ||| | || || ||| |||||||| | ||| || ||||||| | || || || Sbjct 674647 TCTCATCAGCAGATGTTGTGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGGTAGGA 674588 Query 48770 TTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 ||||||| || || || ||||| || | ||| Sbjct 674587 CCTTTCCAAAGTCTTGAACCCAAAGTAATCGTA 674555 Score = 132 bits (146), Expect = 5e-26 Identities = 187/263 (71%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 19240 TCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 ||||| || || || ||| | ||||| || |||||||| | ||| ||||| || |||| Sbjct 2269906 TCTATTAACAAGCTATACGTCTCTGAGTGGATATTTTCAACAGCAATCTGGAAGGAGTAA 2269847 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTA 19359 || |||| || || || || |||| | ||||| | | |||||||| Sbjct 2269846 AATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAAAAATTTGCTTGCTAAATTTTCCAAC 2269787 Query 19360 ACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCT 19419 || ||||||||||| ||||| || || || || |||||||| || ||||||||||||| | Sbjct 2269786 ACAATTCCATCACTCGCTGCGAAGAAAGCCAACACATGTTTTATGAAATGTTTTTCATTT 2269727 Query 19420 GAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAA 19479 ||||| | | |||| || | ||| |||| || || | ||||||| ||||||| Sbjct 2269726 TCATTTAATTTTTCGAAATCTTTCAAATCGCTAGACAAGTCAATTTCTTCAGCTGTCCAG 2269667 Query 19480 AAAGAAGCCTCTGCTTTTTTATA 19502 || || || || |||||||| || Sbjct 2269666 AAGGACGCTTCCGCTTTTTTGTA 2269644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107689835120