Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq10 178 1e-38 seq12 176 4e-38 seq5 123 2e-22 seq6 114 1e-19 >seq10 Length=1594295 Score = 178 bits (196), Expect = 1e-38 Identities = 544/829 (66%), Gaps = 29/829 (3%) Strand=Plus/Minus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGA 551848 ||||||| | || | || || ||||||||||| || || |||| | |||||||| Sbjct 565306 TGGAGATACGCACTTAGGAGGTGAAGATTTTGACAACAGGTTGGTGAACTTTTGTGTTGA 565247 Query 551849 AGATTTTAAACGAAAAAACAAAGTT---GATCTATCTACATCTGCCAAAGCTCTTCGTCG 551905 |||||||||| ||||||| | || ||| |||||| | || ||| | | | Sbjct 565246 AGATTTTAAAAGAAAAAATAGAGGAAAGGATTTATCTAAGAATAGCAGAGCCTTAAGAAG 565187 Query 551906 TCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTAT 551965 || ||||| || || |||||||| || | | || || ||| ||| |||| || Sbjct 565186 ATTACGAACTCAATGTGAGAGAGCCAAGCGTACCTTATCCTCCTCTACACAAGCCACCAT 565127 Query 551966 TGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATT 552025 ||| | || || | || || || || || || | | | | | || |||| ||| Sbjct 565126 CGAAATTGACTCCCTTTTCGAAGGTATCGACTACAGTGTGACGGTGAGTAGAGCCAGATT 565067 Query 552026 TGAAGATATTTGTTCTGATCTCTTTAGAAAAAC---AATTGAACCAGTAGAACAAGTTTT 552082 ||| || | ||| ||| ||| | | || |||| || || || | || || Sbjct 565066 TGAGGAACTCTGTATCGATTACTTCCGTGATACGCTAATT---CCTGTTGAGAAGGTATT 565010 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 | |||| | | ||| || || | || || ||| |||| ||||||||||| || || Sbjct 565009 GAAAGATGCCATGATGGACAAGAAGAGCGTGCACGAAGTTGTCCTTGTTGGTGGTTCCAC 564950 Query 552143 AAGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAATTAAATG 552201 ||||||||| ||||||| | | ||||| || ||| || || || || || Sbjct 564949 AAGAATTCCCAAAATTCAAACACTCATTAAGGAGTTCTTT-AACGGAAAGGAAGCC--TG 564893 Query 552202 AAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | | | || || ||||| || ||||| |||||||| ||| | |||||||| ||| | Sbjct 564892 CAGATCCATCAACCCTGATGAAGCCGTTGCGTATGGTGCAGCAGTACAAGCAGCCATTTT 564833 Query 552260 TTCTGGACAAACTGATGAAAAAC--TACAAAATATTGTACTTGTAGATGT-TACTCCTCT 552316 ||||| | | || || | ||||| || | | || ||||||| | |||| | Sbjct 564832 GTCTGGTGA--CCAATCCAATGCGGTACAAGATTTGTTGCTCTTAGATGTGTGTTCCT-T 564776 Query 552317 ATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTAC 552376 ||| || ||||| ||||| | ||||| ||||||| || || || || |||||||| || Sbjct 564775 ATCCCTCGGTTTGGAAACCGCAGGAGGAGTTATGACCAAGCTGATTGAGAGAAATACCAC 564716 Query 552377 TATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTAC 552436 || || || || || | || |||| ||| | ||||| ||| | | || Sbjct 564715 CATCCCAGCAAAGAAGAGTCAAATCTTCACTACCTATGCTGATAACCAACCAGGAGTGTT 564656 Query 552437 AATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTG----GTA 552492 || ||| | | |||||||| ||| | ||||| || || ||||||| ||| Sbjct 564655 GATCCAAGTGTACGAAGGAGAGAGAGCCCTAACTAAGGACAA----CAACTTGTTGGGTA 564600 Query 552493 CTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTT 552552 ||| | |||| ||||| || || || || | ||| || |||||||||||||| | Sbjct 564599 AATTTCACCTAGACGGTATCCCACCAGCACCGAGAAAAGTCCCACAAATTGAAGTTACCT 564540 Query 552553 TCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 | ||||| ||||| ||||| || | ||||| |||||| ||| ||||| Sbjct 564539 TTGATATTGATGCTAATGGTATCCTTAATGTTACTGCTGTTGAAAAATC 564491 Score = 163 bits (180), Expect = 2e-34 Identities = 367/548 (67%), Gaps = 15/548 (3%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || ||||| || | || ||||| ||| || || || || ||| ||| | || Sbjct 565962 GCCATCGGTATTGACCTTGGTACCACCTATTCCTGCGTCGGAGTATGGAGAAACGAAAAT 565903 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || ||||||||||| || || |||||||| ||||||||||| ||| | ||||| Sbjct 565902 GTAGATATCATTGCCAATGACCAGGGAAACAGAACCACTCCATCTTACGTTGCCTTCACT 565843 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || || |||| ||||| || || | |||| | | || || || Sbjct 565842 GACACGGAGAGGCTAATTGGAGATGCCGCTAAGAACCAAGTGGCAAGGAACCCAGAGAAC 565783 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 ||| |||||||||| || | ||||||||||| | || | ||| || |||| ||| Sbjct 565782 ACTGTTTTTGATGCAAAGAGGTTAATTGGAAGGAAGTTCACTGAATCTTCTGTGCAGAGC 565723 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAA------TGTTTCTGGAAAACCTTATATT 550285 |||||||| || ||||| || | ||| || |||| || || || ||| Sbjct 565722 GATATGAAACACTGGCCATT---TACTGTCAAGTCCGGTGTTGATGAGAAGCCCATGATT 565666 Query 550286 GAAGCTACTCATGAAGGATCTGTTAAACAATT-TTC--ACCAGAACAAATTTCATCTATG 550342 || | | || | ||| | || |||| ||| || ||| |||| || || ||| Sbjct 565665 GAGGTATCCTATCAGGGA---GAGAAGAAATTATTCCACCCTGAAGAAATCTCTTCCATG 565609 Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCA 550402 ||||| || |||||| ||| || || ||| | || | | | ||||| Sbjct 565608 GTTTTGCAAAAGATGAAAGAAAATGCAGAAGCGTTTTTAGGAAAGTCCATAAAAAATGCA 565549 Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || || || || ||||| ||||||||||| |||||| | ||||| || || || || || Sbjct 565548 GTCATTACCGTGCCAGCTTATTTTAATGATTCACAAAGGCAAGCCACGAAGGACGCAGGT 565489 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 ||||||||| | ||||| | | |||||||| || || ||||| ||||| |||| Sbjct 565488 ACTATTGCTGGTTTGAATGTCATGAGAATTATCAACGAGCCAACTGCAGCTGCTATTGCT 565429 Query 550523 TATGGACT 550530 ||||| || Sbjct 565428 TATGGTCT 565421 >seq12 Length=1585989 Score = 176 bits (194), Expect = 4e-38 Identities = 320/467 (69%), Gaps = 11/467 (2%) Strand=Plus/Plus Query 552013 CGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAG 552072 |||| ||||| |||||||| | | ||| | |||||| |||| | ||||| ||| Sbjct 745217 CGAGAGCCAAGTTTGAAGAATTGAATGATGACTTATTTAGAGAAACTTTAGAACCCGTA- 745275 Query 552073 AACAAGTTTTAAGA-GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTT 552131 || ||| | ||| || |||| ||| || |||| | ||||||| || || || Sbjct 745276 AAGAAGGTACTAGATGACGCAAAATATGAAAAGAGCAAAATCGATGAAATCGTTCTAGTA 745335 Query 552132 GGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAA 552191 || |||||||| | || || ||||||| |||| ||| | |||||| |||||| Sbjct 745336 GGAGGATCTACTCGTATCCCCAAAATTCAACAAATTATAAAAGAATTTTTCAACGGTAAA 745395 Query 552192 AAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCA 552251 || |||| | || |||| |||||||| || || || || ||||| || ||||| || Sbjct 745396 GAACCAAATAGAGGTATTAACCCAGATGAAGCAGTAGCATACGGTGCTGCCATTCAGGCG 745455 Query 552252 GCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACT 552311 | ||| ||| ||| ||| || | ||| || | || || ||||||||||| Sbjct 745456 GGAATTATTTTGGGA---------GAAGAATTGCAAGATGTGGTTCTGCTAGATGTTACT 745506 Query 552312 CCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAAT 552371 || ||| | | ||| ||||||| ||||||||||| ||||| | || || | |||||| Sbjct 745507 CCACTAACCTTAGGTATAGAAACCGTTGGAGGTATCATGACCCAACTGATTAAAAGAAAT 745566 Query 552372 ACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCT 552431 || |||||| || || || | |||||||| || ||| || ||| | ||| Sbjct 745567 ACAGTTATTCCAACGAAGAAGTCACAGACCTTTTCTACCTACCAAGACAACCAACCAGCT 745626 Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAA 552478 || ||| ||| |||||||||| |||||| ||| || || ||||| Sbjct 745627 GTGTTAATCCAAGTTTTTGAAGGTGAAAGAGCATTAACCAAGGATAA 745673 Score = 132 bits (146), Expect = 4e-25 Identities = 351/526 (67%), Gaps = 10/526 (2%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || || ||||| || || || ||||| |||||||||| ||||||| | ||| Sbjct 744349 ATCGGAATTGACTTAGGTACGACTTACAGTTGCGTTGGTGTTTTCAAAAATGGCAGAGTC 744408 Query 550055 GAAATTATTGC-CAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 ||||| |||| |||||| || ||| | | || ||||| ||||| || ||| ||| Sbjct 744409 GAAAT-ATTGAACAATGAGTTGGGAAACCGTATCACGCCATCCTATGTGTCATTCGTGGA 744467 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 ||| ||| || || ||||| |||| ||||||| | || || | || Sbjct 744468 CGGAGAAAGGAAAGTGGGAGAAGCAGCTAAATTGGAAGCCACCCTACACCCCACACAGAC 744527 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGA 550233 | || |||| ||||| || || ||||||| ||| | || | ||| | ||| Sbjct 744528 AGTATTCGATGTGAAACGATTGATAGGAAGAAAGTTTGACGACCAGGAAGTTGTGAAAGA 744587 Query 550234 TATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTAC 550293 || || | ||| | | ||||||| || ||||| || |||| || ||| Sbjct 744588 TAGGACTTTATTGCCATACGAAATTGTAAACCAGGAAGGAAAGCCAAATATAAGAG-TAC 744646 Query 550294 TCATGAAGGATCTGTTAAACAA--TTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 || |||||| | | || | ||| | ||||||||||| | |||||||| Sbjct 744647 AGATAAAGGATAAGA-AGACGACCTTTGCGCCAGAACAAATCAGTGCCATGGTTTTGGAA 744705 Query 550352 AAAATGAAACAAACAGC-CAGTGCTTTTGTTGGTCAAG-AAGTTACGGATGCAGTAATAA 550409 ||||||||| ||| ||| || | |||| |||| ||| ||||| | ||||| ||| Sbjct 744706 AAAATGAAAGAAATAGCTCAATCCTTT--TTGGGAAAGCCAGTTAAAAACGCAGTTGTAA 744763 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | |||||||| || || ||||| |||| | ||||| || || || || ||| |||| Sbjct 744764 CAGTACCAGCCTACTTCAATGATGCACAGAGACAAGCAACAAAGGACGCAGGAACCATTG 744823 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 | || | || || |||||||||| |||||||| ||||| || || Sbjct 744824 CAGGTTTAAACATTGTTCGTATTATAAATGAACCAACTGCAGCAGC 744869 >seq5 Length=2463301 Score = 123 bits (136), Expect = 2e-22 Identities = 144/191 (75%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 563286 TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAAT 563345 ||||| || ||||| |||| | |||||| ||| || | |||||| || |||||||| Sbjct 610955 TTTGG--ATGTTGTAGTCAGACAAGGTTCTTCCATCCTCTAATTGTTTGCCAGCAAAAAT 610898 Query 563346 AAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTC 563405 ||||||||||||||||| || ||||| ||||| || |||||||| || || || Sbjct 610897 GAGTCTTTGCTGATCAGGGGGGATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTC 610838 Query 563406 AATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 |||||| |||| ||| | || || | ||| | ||| || || || || ||||| |||| Sbjct 610837 AATTGTGTCAG-ATGACTCCACATCCAAAGTGATAGTCTTTCCCGTTAGGGTTTTCACGA 610779 Query 563465 AAATTTGCATA 563475 ||||||||||| Sbjct 610778 AAATTTGCATA 610768 Score = 114 bits (126), Expect = 1e-19 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAG 563311 |||||||| ||||| | || | ||| ||| ||||| || ||||| |||| | | Sbjct 610761 CTGAGACGTAGTACTAAGTGTAATGTAGATTCCTTTTGG--ATGTTGTAGTCAGACAAGG 610704 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 ||||| |||||| | |||||| || |||||||| ||||| || || ||||| || |||| Sbjct 610703 TTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGTGGGATTC 610644 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCG 563430 | ||||| || |||||||| || || ||||| || || | ||| | || || Sbjct 610643 CCTCTTTGTCCTGAATTTTGGCCTTCACATTTTCAATCGTGTCGGA-TGACTCCACGTCC 610585 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||| | ||| || || || ||||| || ||||||||||||||| Sbjct 610584 AAAGTGATAGTCTTTCCCGTTAGAGTCTTCACGAAAATTTGCATA 610540 Score = 109 bits (120), Expect = 4e-18 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAG 563311 || ||||| ||||| | || | ||| ||| ||||| || || || |||| | | Sbjct 611217 CTCAGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGG--ATGTTATAGTCAGACAAGG 611160 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 ||||| |||||| | |||||| || |||||||||||||| || || ||||| || |||| Sbjct 611159 TTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTC 611100 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCG 563430 | ||||| || |||||||| |||||| ||||| || || | ||| | || || Sbjct 611099 CCTCTTTGTCCTGAATTTTCGCTTTTACATTTTCAATCGTGTC-GGATGACTCCACGTCC 611041 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||| | || || || || || || || ||||||||||||||| Sbjct 611040 AAAGTGATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCATA 610996 >seq6 Length=3498471 Score = 114 bits (126), Expect = 1e-19 Identities = 139/188 (74%), Gaps = 10/188 (5%) Strand=Plus/Minus Query 930651 AATAAAGTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACAT 930710 || ||||| || | ||||| ||||| |||||||||||||||||||||||| |||||||| Sbjct 1934760 AAAAAAGTGTTGGTCGATTTCTCTTCCCCAAATATTGCCAAAGAAATGCATGTTGGACAT 1934701 Query 930711 TTGCGTTCTACCATTATTGGAGAATCTTTATGTAGATTATATGAAT-----ATTGTGGAA 930765 || | || ||||| | ||||| |||||| | | | |||| | ||||||| Sbjct 1934700 TTAAGATCAACCATATTAGGAGACAGCATATGTAAAATTTTCGAATTCCTAAATGTGGAA 1934641 Query 930766 GTAAAGTTCATCGAGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTG 930825 | || | | || |||||||||||||| ||||| ||||||||||| ||| | || Sbjct 1934640 --ACGGT---TAGGGTAAATCATATTGGTGACTGGGGTACACAATTTGGAATGATCATAA 1934586 Query 930826 CTTATATA 930833 ||||||| Sbjct 1934585 ATTATATA 1934578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029287644247420