Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 >seq5 Length=2463301 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || ||||||| || ||||| || || ||| | || Sbjct 610997 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 611056 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | || | || || |||| || |||||||||||| | || || || Sbjct 611057 GACACGATTGAAAATGTAAAAGCGAAAATTCAG-GACAAAGAGGGAATCCCACCTGACCA 611115 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||||||||| ||||| |||||||||||||||||| | ||| || | || ||||| Sbjct 611116 ACAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTATAA 611175 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| ||||| ||||| || | ||| | ||| || Sbjct 611176 CATCCAAAAGGAATCCACCTTACACTTAGTACTA 611209 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| ||||||| || || || || || ||| | || Sbjct 610769 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 610828 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||| |||||||||||| | ||| ||||| Sbjct 610829 GACACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAG 610888 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||| || ||||| ||||||||||| || ||| | ||| || | || || ||| Sbjct 610889 CAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAAC 610948 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| ||||| || | ||| |||| ||| | |||||||| || || Sbjct 610949 ATCCAAAAGGAATCCACGTTACACTTGGTCTTACGTTTACGAGGTGGTAT 610998 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || ||||||| || || || || || ||| | || Sbjct 610541 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 610600 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | || | ||| ||||| |||||||||||| | || || ||| Sbjct 610601 GACACGATTGAAAATGTGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 610660 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| || ||||| |||||||||||||||||| | ||| || | || || ||| Sbjct 610661 CAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAAC 610720 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 || ||||| |||||||| | ||| | ||| || Sbjct 610721 ATCCAAAAGGAATCTACATTACACTTAGTACTA 610753 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||||||| | || || |||||||||||||| ||||| ||||| ||||| || Sbjct 610406 GACAAAGAGGGAATCCCACCTGACCAACAGAGACTTATTTTTGCTGGCAAGCAATTAGAG 610465 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | ||| || | || || ||||| ||||| ||||| || | ||| |||| ||| Sbjct 610466 GATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCCACCTTACACTTGGTGTTA 610525 Query 28767 AGATTACGAGGAGGGAT 28783 | |||||||| || || Sbjct 610526 CGTTTACGAGGTGGTAT 610542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425403980829882