Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq5 172 3e-38 >seq5 Length=2463301 Score = 172 bits (190), Expect = 3e-38 Identities = 303/439 (69%), Gaps = 2/439 (0%) Strand=Plus/Minus Query 25925 ACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATT 25984 ||| ||| ||| || | || || | ||| | ||||| || | ||||| ||||| | | Sbjct 675153 ACTCTCTTCATGAAAAGGTCAGGGACCCATACAGCATAGAAAAGGTCTCTAGCTCTTAGT 675094 Query 25985 TCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGT 26044 || ||||| |||||||| || || |||| || || ||||||||||||||||||||| Sbjct 675093 TCCTCTTTCCCGTGATTTTTACGAAGGTCTAGAAATTCGAAAATATCTGAGTGCCATGGT 675034 Query 26045 TCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCA 26104 || | || | ||||| || ||||| ||||| |||||||| ||||| ||||| || Sbjct 675033 TCGATGTACACTGCAAAGGATCCCTTTCTCTTTCCGCCACCTTGGTCTACATATCTAGCT 674974 Query 26105 GTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGA 26164 || |||||||| || ||| |||||| ||||| || | || | |||||| || | | Sbjct 674973 GTATCATTGAACACCCTCAGCATTGGCACTAACCCGTTGGATATTCCGTTGGTTCCTCTA 674914 Query 26165 ATCTTGGA-TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTT 26223 || | ||| | |||| ||||||||| || | | || |||||||||||| ||| Sbjct 674913 ATGTAGGAGTTTTGTC-CTCTAATATCCTGTACCGCTACTCCAATTCCACCAGCCGTTTT 674855 Query 26224 TGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 ||| || || | | | || |||||||| |||| || |||| ||||||| Sbjct 674854 GCTAATCAGGGCGCACTGTTTCAGCGTCTCGAAAATACCTTCAATCGAATCAGCTTTCAT 674795 Query 26284 TCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGG 26343 | | | ||||| || || | ||||| | || || ||||| || || || || Sbjct 674794 ACAGAGAAGGAAACAGGACGACATTTGCGGTCTGGGCGTCCCAGAATTGAACAACGTAGG 674735 Query 26344 TGTAGCATGAGTATAATAT 26362 ||| || || ||| ||||| Sbjct 674734 TGTTGCGTGTGTAAAATAT 674716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039512739850