Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5 158 2e-33 >seq5 Length=2463301 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | || ||||| | || ||||||| || || || || Sbjct 610777 AATTTGCATACCACCTCTGAGACGTAGTACTAAGTGTAATGTAGATTCCTTTTGGATGTT 610718 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || || ||||| ||| || |||||||| || |||||||| | ||||||||| Sbjct 610717 GTAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTG 610658 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || ||||| ||||| || || ||||||| || | |||| ||| || ||||| Sbjct 610657 GTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTGGCCTTCACATTTTCAATCGTGTCGGA 610598 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | ||| ||||| || || ||||| || || || || |||||||| Sbjct 610597 TGACTCCACGTCCAAAGTGATAGTCTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 610541 Score = 156 bits (172), Expect = 8e-33 Identities = 179/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 193120 AAGTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAA 193179 ||| || ||| | ||||||||||| || ||||| | || || || | || || | Sbjct 611237 AAGGAAATTAAAAACCACCTCTCAGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGA 611178 Query 193180 TATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCT 193239 | |||||||| || || ||||| ||| || |||||||| || |||||||| | ||||| Sbjct 611177 TGTTATAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCT 611118 Query 193240 GTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTAT 193299 |||| ||||| || ||||| ||||| || || ||||| | ||||| |||| ||| || | Sbjct 611117 GTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTCGCTTTTACATTTTCAATCGTGT 611058 Query 193300 CGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCA 193359 |||| ||||| || || | ||| || || || || ||||| || || || || ||||||| Sbjct 611057 CGGATGACTCCACGTCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCA 610998 Query 193360 T 193360 | Sbjct 610997 T 610997 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||| || || | |||| || || || | || || || || Sbjct 611005 AATTTGCATACCACCTCGTAAACGTAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTT 610946 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || || ||||| ||| ||||||||||| || |||||||| | ||| || || Sbjct 610945 GTAGTCAGACAAGGTTCTTCCATCCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTG 610886 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || ||||| ||||| || || ||||| | || | |||| ||| || || || Sbjct 610885 ATCAGGGGGGATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGA 610826 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | ||| ||||| || || ||||| ||||| || || |||||||| Sbjct 610825 TGACTCCACATCCAAAGTGATAGTCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 610769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899652623182560