Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 9e-12 >seq5 Length=2463301 Score = 86.0 bits (94), Expect = 9e-12 Identities = 188/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481 || ||||| || |||| |||||||| |||| | || || || || |||| | ||| Sbjct 2269921 TCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATTTTCAACAGCA 2269862 Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCT 18541 ||||| || ||||| | ||||| | | ||| | | || ||||| | | Sbjct 2269861 ATCTGGAAGGAGTAAAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAAAAATTTGCTT 2269802 Query 18542 ACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATG 18601 | ||||| || || || || ||| | |||||| || ||||| |||| ||| ||| Sbjct 2269801 GCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACACATGTTTTATG 2269742 Query 18602 AAATGTTTTTCATTATCCTTGAGATTGTTC-CATTCATCTATATCTTTTGATAGATCAAC 18660 |||||||||||||| || || | ||| ||| | || | | ||| | || | |||| Sbjct 2269741 AAATGTTTTTCATTTTCATTTA-ATTTTTCGAAATCTTTCAAATCGCTAGACAAGTCAAT 2269683 Query 18661 TTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTA 18699 |||||| | |||||| || || | ||| || | |||||| Sbjct 2269682 TTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTA 2269644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870554552800