Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5 150 3e-31 seq62 113 8e-20 >seq5 Length=2463301 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||||| || |||| |||||| ||||| || | || || || ||||| || Sbjct 611227 AAAACCACCTCTCAGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTC 611168 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || || | || | | || ||||||||||| ||||||||||| | ||||||||||||||| Sbjct 611167 AGACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGG 611108 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| ||||| ||||| || || ||||| ||||||||| || || || || || || Sbjct 611107 TGGGATTCCCTCTTTGTCCTGAATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTC 611048 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||| || || |||| || || | ||| || ||||| Sbjct 611047 CACGTCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 610997 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || |||| |||||| ||||| |||| || || || || || || Sbjct 610770 ATACCACCTCTGAGACGTAGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCA 610711 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | | || ||||||||||| ||||||||||| | |||||||||||||||| Sbjct 610710 GACAAGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGT 610651 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || ||||| || ||||| || || || || || || Sbjct 610650 GGGATTCCCTCTTTGTCCTGAATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCC 610591 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| || || || || |||| || || | ||| || ||||| Sbjct 610590 ACGTCCAAAGTGATAGTCTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 610541 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| | ||||| || || ||||| || | || || || || || || Sbjct 610542 ATACCACCTCGTAAACGTAACACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCA 610483 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | | || || ||||| || ||||||||||| | |||||||||||||||| Sbjct 610482 GACAAGGTTCTTCCATCCTCTAATTGCTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGT 610423 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || |||||| || ||||| || || || || || || Sbjct 610422 GGGATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCGGATGACTCC 610363 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 || || | ||| |||||||| || Sbjct 610362 ACGTCCAAAGTGATGGTTTTTCC 610340 Score = 111 bits (122), Expect = 3e-19 Identities = 176/250 (70%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 39419 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTC 39478 |||| | || || || | | ||| | ||| || || || || ||||||| | |||| || Sbjct 2269892 ATACGTCTCTGAGTGGATATTTTCAACAGCAATCTGGAAGGAGTAAAATTTCTTTGCCTC 2269833 Query 39479 TGAATACTGAACTTCG-GAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAG 39537 | | || |||| | | ||| | | | | ||||||| || | ||||| |||||| Sbjct 2269832 CGTAATTTGCACTTGGCGTAAAAATTTGCTTG-CTAAATTTTCCAACACAATTCCATCAC 2269774 Query 39538 ATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTT 39597 ||||||||||| || || |||| ||| || |||||||||||||| || ||||| |||| Sbjct 2269773 TCGCTGCGAAGAAAGCCAACACATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTT 2269714 Query 39598 CCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGG 39657 | || || | |||| | || || || | |||||| |||||| || || ||| | | Sbjct 2269713 CGAAATCTTTCAAATCGCTAGACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCG 2269654 Query 39658 ATTTTTTATA 39667 |||||| || Sbjct 2269653 CTTTTTTGTA 2269644 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| | ||||| || || ||||| || | || || || || || || Sbjct 610998 ATACCACCTCGTAAACGTAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCA 610939 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | | || || |||||||| ||||||||||| | ||| || || ||||| Sbjct 610938 GACAAGGTTCTTCCATCCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGG 610879 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || |||||| || ||||| || || || || || || Sbjct 610878 GGGATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCC 610819 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| || || || || |||| ||||| | ||| || ||||| Sbjct 610818 ACATCCAAAGTGATAGTCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 610769 >seq62 Length=53519 Score = 113 bits (124), Expect = 8e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| || || || | | | |||| ||||| ||||||||||| |||||||| ||| Sbjct 26332 TCCTCCAACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTA 26391 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || | ||||| || ||||| | || || || || | || || || || || ||| Sbjct 26392 TCCTCAATTTTTGACTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATG 26451 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAAAA 172081 ||||| || ||||||||||| | ||||||||||||||| || |||| Sbjct 26452 GTTTTTCCGGTTAATGTTTTTACGAATATCTGCATTTTGGTAAAAAA 26498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905134212356400