Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 210 6e-49 seq14 113 1e-19 seq4 96.9 1e-14 seq6 84.2 6e-11 >seq5 Length=2463301 Score = 210 bits (232), Expect = 6e-49 Identities = 623/952 (65%), Gaps = 19/952 (2%) Strand=Plus/Minus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTC-GTCGCTGTATTCT--ACAATCTCA 155645 || || |||| ||||||||| || | | | ||| | | |||| || | ||||||| Sbjct 675474 ATGGAGGCCAAATTACATACGGC---CACTTCGTCTGGGGAAGTATACTCAATAATCTCA 675418 Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705 || || |||||| || || || || || || ||||| ||||| || || ||||||| Sbjct 675417 CAACAGAGGTTACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTACAA 675358 Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGC 155765 | ||| || || | ||||| || || || || ||||| | || ||| | | Sbjct 675357 GAATCTTTATACAACATGTAGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCAAAC 675298 Query 155766 CAGAGGTCACGGGC-ATTA-ATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATAT 155823 || || || | || | | | || || ||| | ||||| ||||||||| | | Sbjct 675297 CATAGATCTTGCGCCAGGACAGTT--TTTTTGCCCATACCTTCTTCCTCATATTTTAAGT 675240 Query 155824 ACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAA 155883 | ||| || | | |||||||| || | ||||| | || || || | || ||||| | Sbjct 675239 ATAGCTTTTCGAATTCCTCACCCCAAGACTCACTTAACCCTGGACATTCATTCGGGCACA 675180 Query 155884 ACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAG 155943 || | |||| | | ||| | |||| | || ||| || | ||| |||| | || Sbjct 675179 TCAAAGTCCAATTCTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATACAG 675120 Query 155944 CATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGA 156003 ||||||||||||| || || || ||||| | |||||||| || || || |||| | Sbjct 675119 CATAGAAAAGGTCTCTAGCTCTTAGTTCCTCTTTCCCGTGATTTTTACGAAGGTCTAGAA 675060 Query 156004 ATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT-- 156061 |||| |||||| | || ||| || | |||| ||||| || || ||||| Sbjct 675059 ATTCGAAAATATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCCCTTTCTCTTTC 675000 Query 156062 -GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATAC 156120 |||||| || |||||||| | ||| || | |||||| || | ||||| || | | | Sbjct 674999 CGCCACCTTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTAACC 674940 Query 156121 CATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATAT 156180 | ||||| | || |||||||| | ||| | || | | || || || | Sbjct 674939 CGTTGGATATTCCGTTGGTTCCTCTAATGTAGGAGTTTTGTCCTCTAATATCCTGTACCG 674880 Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 || |||||| ||||| | | ||| ||| | ||||| | || | || | ||||| Sbjct 674879 CTACTCCAATTCCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTCGAAAA 674820 Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300 |||||||||| |||||| ||| ||| | || || | || || | ||| |||| | Sbjct 674819 TACCTTCAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTTGCGGTCTGG 674760 Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAAT 156360 | || |||| ||||| | ||||||||||| || ||||||| || | ||||||| || Sbjct 674759 GCGTCCCAGAATTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTTGAGACATAAGAT 674700 Query 156361 CGTATGTCTCCTTAATCTTCTCAAGATTAGACCC---GTGAATACAGATAGAGACCCTCA 156417 || ||||| || || |||| ||| ||| || | || || || |||| Sbjct 674699 GATACGTCTCTAGCGCTTTTTCCAGAT---CCCCAATGTGGATGCCAATGGATACTCTCA 674643 Query 156418 TCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTT 156477 || || ||| || || | || | |||| ||||| ||||| || ||||| | | || Sbjct 674642 TCAGCAGATGTTGTGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGGTAGGACCTTT 674583 Query 156478 CCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAAT 156529 ||| ||| || ||||| || ||||| | |||||| | |||| ||||| Sbjct 674582 CCAAAGTCTTGAACCCAAAGTAATCGTAATTAAAATCCCTCGTGTAGTCAAT 674531 >seq14 Length=2283415 Score = 113 bits (124), Expect = 1e-19 Identities = 311/465 (67%), Gaps = 15/465 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 ||||| || || || | || || | |||||||||| |||||| ||| ||| || || Sbjct 750839 CTATCGAATCTGCCTGGTCGGGTAATGGCTGGGTCTAGGATATCGACTCGGTTGGTACCT 750898 Query 288910 GCCAATACAACAA---TAG-ATTCGGTTTGCTTAAATCCATCCATACTTGTTAAA-ATTT 288964 || || || || | || ||||| | | ||| |||||||| || | || |||| Sbjct 750899 GCTAAAACTACTACCTTATCATTCGATGTATGGAAA-CCATCCAT-CTCGACCAACATTT 750956 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTG---AATCACCCGAATCGCTCC 289021 | || || || | ||| |||||||||||| || | || || ||||| | | || Sbjct 750957 GGTTTAGCGTATTTTCTCTTTCATCATTTCCCCCACCTGCGAAACCACCCT--TGGATC- 751013 Query 289022 tttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCG 289081 | || |||| || ||||| |||||||| || || || | |||| | || || ||||| Sbjct 751014 TCTTCCTACCCACTGCATCTATTTCGTCTATAAATATTATGGACGGTGCATGTTTTCTCG 751073 Query 289082 CAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATT 289141 | |||||||||||||| || | ||| | ||| | |||||| | | ||| | ||| | Sbjct 751074 CTTGAGCAAATAATTCTCTCACTCTGGACGGTCCTATGCCAACAAAAACTTCGATAAAGT 751133 Query 289142 CAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 || | | || | || || | ||||| ||||| |||||||| || | || || | Sbjct 751134 CACTACCACTTATGTTAAAAAAAGGGACATTAGCTTCCCCTGCTACAGCTTTGGCTAGTA 751193 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAG 289261 ||| || ||||| || || | || || ||| | || || || | |||||||| Sbjct 751194 ATGTTTTTCCTGTCCCTGGGGCACCACATAGAAGAGCCCCTTTGGGCATCTTTGCCCCTA 751253 Query 289262 CAGACTTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCC 289305 | | ||| || |||| |||| ||||| || |||| |||| Sbjct 751254 ACGTTTCATACTT-AGAGGGGGCTTTCAAAAAATCAACAAATTCC 751297 >seq4 Length=3285730 Score = 96.9 bits (106), Expect = 1e-14 Identities = 215/323 (67%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||||||||| |||||||| | | ||| || | || || | | || | Sbjct 1890081 CCAACTGCATCAATTTCATCAATGAAGACGATACATGGCGCATGTTTTTTGGCTGCTTGG 1890022 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | ||||||| | || |||| ||| || ||||||| ||||||| || | Sbjct 1890021 AAGAGCTCTCTTATCCTTCTGGCACCAACACCTACGAACATTTCCTCAAATTCGGAGCCT 1889962 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 ||| |||| ||||| | ||||| ||||| || |||| || || || | | || || Sbjct 1889961 GATGCTTGTATGAAAGGAACATTCGCTTCCCCCGCTATCGCTCTAGCAATTAACGTTTTT 1889902 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 ||||| || ||| || | || | ||||| |||| || || || || Sbjct 1889901 CCTGTACCCGGTTCACCGGACAGGAGTATCCCCTTCGGTAACTTGGCACCTATTTTTGTA 1889842 Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329 |||| |||| |||||||| | || | ||||| |||||||| | ||| | ||||| Sbjct 1889841 AATTTATCAGAATTCTTTAAATAATCAATTATTTCTTCAAGTTCTTGTTTCACTTCATCG 1889782 Query 289330 CATCCTGCTACATCAGCAAAAGT 289352 || ||| |||||| ||||| || Sbjct 1889781 CACCCTTTTACATCTGCAAAGGT 1889759 >seq6 Length=3498471 Score = 84.2 bits (92), Expect = 6e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 289039 TCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCT 289098 ||||||||||| || ||||| | |||||| || || ||||| || |||||| |||| Sbjct 3392409 TCAATTTCGTCCATAAAAATAATGGACGGAGCATGTTCCCTCGCCATGACAAATAGTTCT 3392468 Query 289099 CTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA 289158 || || || ||| ||| | ||| ||| ||||| ||| ||| |||| || Sbjct 3392469 CTCACCATTCTTGATCCTTCACCGATGTACTTTTGTACAAGTTCCGAACCGGACACCCTT 3392528 Query 289159 ATGAATGTTACATT-TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCC 289217 || || | |||||| || | | ||||||||| || || || || || ||||| || || Sbjct 3392529 AT-AAAGGTACATTCTGTATGGTGTGCTACTGCTCTGGCTAGGAGGGTTTTACCAGTACC 3392587 Query 289218 AGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 ||||| || | || || || ||||| || Sbjct 3392588 TGGTGGGCCATATAGTAATACCCCCTTAGG 3392617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814620489246