Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5 116 3e-21 >seq5 Length=2463301 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| ||||| || || ||||| || | || || || | | Sbjct 610769 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 610828 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || || || || |||||||| ||||| || || ||||| Sbjct 610829 GACACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAG 610888 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || ||||| || ||||| | |||||| |||| | |||| || || ||| Sbjct 610889 CAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAAC 610948 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| || |||||||||| || || || || || || Sbjct 610949 ATCCAAAAGGAATCCACGTTACACTTGGTCTTACGTTTACGAGGTGG 610995 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || ||||| || || || || || | || || || | || Sbjct 610997 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 611056 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| |||||| || || || |||||||| ||||| || || || ||| Sbjct 611057 GACACGATTGAAAATGTAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 611116 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| || ||||| |||| ||| |||| | |||| || |||||| Sbjct 611117 CAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTATAAC 611176 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| || ||||||| || Sbjct 611177 ATCCAAAAGGAATCCACCTTACACTTAGT 611205 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || ||||| || || ||||| || | || || || | || Sbjct 610541 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 610600 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || || || |||||||| ||||| || || || ||| Sbjct 610601 GACACGATTGAAAATGTGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 610660 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| || ||||| |||| ||| |||| | |||| || || ||| Sbjct 610661 CAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAAC 610720 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| ||| ||||||| || Sbjct 610721 ATCCAAAAGGAATCTACATTACACTTAGT 610749 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 || ||||| || || | || || || | |||||||| | |||| || || || Sbjct 610340 GGAAAAACCATCACTTTGGACGTGGAGTCATCCGACACAATTGAAAATGTGAAGGCTAAA 610399 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 || || |||||||| ||||| || || || ||||| | | || ||||| || || || Sbjct 610400 ATTCAGGACAAAGAGGGAATCCCACCTGACCAACAGAGACTTATTTTTGCTGGCAAGCAA 610459 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 | |||||| |||| | |||| || || ||||| ||||||||||| || |||||||| Sbjct 610460 TTAGAGGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCCACCTTACACTTG 610519 Query 24911 GTGTTGCGATTGCGCGGAGG 24930 ||||| || || || || || Sbjct 610520 GTGTTACGTTTACGAGGTGG 610539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896711452240