Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 4e-12 >seq5 Length=2463301 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || | ||| | |||| ||||| || ||||||||||| || | | | | |||| Sbjct 611208 AGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTTCCATCT 611149 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||| || || || || || |||| || ||||| | || | ||||| ||||| Sbjct 611148 TCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCC 611089 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||| || | | |||| || | ||| || || | || |||||| Sbjct 611088 TGAATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATGGTC 611029 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| |||||||| || || || ||||| Sbjct 611028 TTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 610997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692172837802