Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 145 2e-29 >seq5 Length=2463301 Score = 145 bits (160), Expect = 2e-29 Identities = 433/659 (66%), Gaps = 17/659 (3%) Strand=Plus/Plus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||| || | || || || ||||| | || || | |||||| ||||||||||||| || Sbjct 674768 CAAATGTCGTCCTGTTTCCTTCTCTGTATGAAAGCTGATTCGATTGAAGGTATTTTCGAG 674827 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 | || ||| | || || ||| |||| |||| |||||||| | || || Sbjct 674828 ACGCTGAAACAGTGCGCCCTGATTAGCAAAACGGCTGGTGGAATTGGAGTAGCGGTACAG 674887 Query 110631 GATATTCGCT--CAAAAGGAGCAAAT-ATCGCAACAGCGAAGGGTGCTTCAACTGGACTT 110687 |||||| | ||||| | || | | ||| | | || | |||| || | Sbjct 674888 GATATTAGAGGACAAAACTCCTACATTAGAGGAAC--CAACGGAATATCCAACGGGT-TA 674944 Query 110688 GTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAG 110744 || |||||| | || || ||||| || || || | |||||| | |||||||| ||| Sbjct 674945 GTGCCAATGCTGAGGGTGTTCAATGATACAGCTAGATATGTAGACCAAGGTGGCGGAAAG 675004 Query 110745 AGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTA 110804 ||||| || || ||||| | || ||||||| ||||| |||||||| || ||||| || Sbjct 675005 AGAAAGGGATCCTTTGCAGTGTACATCGAACCATGGCACTCAGATATTTTCGAATTTCTA 675064 Query 110805 GAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATG 110864 || |||||||||||||| || || |||| |||||| | || | || ||||| | Sbjct 675065 GACCTTCGTAAAAATCACGGGAAAGAGGAACTAAGAGCTAGAGACCTTTTCTATGCTGTA 675124 Query 110865 TGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGT 110924 ||| | | || | |||||||| | || |||||||| | ||| || | ||||| Sbjct 675125 TGGGTCCCTGACCTTTTCATGAAGAGAGTAAAAGAAAATCAGAATTGGACTTTGATGTGC 675184 Query 110925 CCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAA 110984 || || | ||| || || ||| | || | || || ||| | || ||| | Sbjct 675185 CCGAATGAATGTCCAGGGTTAAGTGAGTCTTGGGGTGAGGAATTCGAAAAGCTATACTTA 675244 Query 110985 AAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGCTCAAGAACTTTGGTTC 111041 |||||||| ||||||| | | ||||| ||| | | || ||||| || ||||| Sbjct 675245 AAATATGAGGAAGAAGGTA---TGGGCAAAAAAACTGTCCTGGCGCAAGATCTATGGTTT 675301 Query 111042 AAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATT 111101 || | || || | ||||| || ||| || || |||||||||||| | | Sbjct 675302 GCCATTTTGCAAAGTCAGATAGAAACGGGTGTTCCCTACATGTTGTATAAAGATTCTTGT 675361 Query 111102 AATCGC-AAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 || ||| || || || |||| ||| || || || || || | |||||| | || |||| Sbjct 675362 AA-CGCGAAGTCCAACCAAAAGAACTTGGGGACGATAAAATGTAGTAACCTCTGTTGTG 675419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186810397445838