Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5 104 6e-17 >seq5 Length=2463301 Score = 104 bits (114), Expect = 6e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 206195 CAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAA 206254 |||||||||| ||||||||||| ||||| || |||||| | ||| || ||| | Sbjct 610338 CAGGAAAAACCATCACTTTGGACGTGGAGTCATCCGACACAATTGAAAATGTGAAGGCTA 610397 Query 206255 AGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGC 206314 | ||||| || ||||| ||||| || ||| || |||||||| || || || |||| Sbjct 610398 AAATTCAGGACAAAGAGGGAATCCCACCTGACCAACAGAGACTTATTTTTGCTGGCAAGC 610457 Query 206315 AGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 | || || |||||||| || ||| | || |||||| |||| || || || || Sbjct 610458 AATTAGAGGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCCAC 610509 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||||||||| ||||| || ||||| | ||| Sbjct 610556 AAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCCGACACGATTGAAAAT 610615 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || ||||| ||||| || ||| || ||||| || || Sbjct 610616 GTGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAACAGAGACTCATTTTT 610675 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || |||||||||||||| || ||| | || |||||| |||| || || ||| Sbjct 610676 GCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCT 610735 Query 206365 AC 206366 || Sbjct 610736 AC 610737 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || ||||||||||| ||||| ||||||||| | ||| Sbjct 610784 AAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCTGACACAATTGAAAAT 610843 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || ||||| ||||| || || |||||||| || || Sbjct 610844 GTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAGCAAAGACTCATTTTT 610903 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || || || |||||||| || ||| | || |||||| |||| || || || Sbjct 610904 GCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCC 610963 Query 206365 AC 206366 || Sbjct 610964 AC 610965 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||||||||| ||||| || ||||| | ||| Sbjct 611012 AAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCCGACACGATTGAAAAT 611071 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| ||||| || ||||| ||||| || ||| || |||||||| || Sbjct 611072 GTAAAAGCGAAA-ATTCAGGACAAAGAGGGAATCCCACCTGACCAACAGAGACTTATTTT 611130 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || |||||||||||||| || ||| | || || ||| |||| || || || Sbjct 611131 TGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTATAACATCCAAAAGGAATC 611190 Query 206364 TAC 206366 || Sbjct 611191 CAC 611193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181818407551518