Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5 125 7e-24 seq62 98.7 1e-15 >seq5 Length=2463301 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||||||| || | || | ||||| || ||||||||||| ||||||||||| | | Sbjct 610767 CCACCTCTGAGACGTAGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCAGAC 610708 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | |||||||| |||||||| | | ||| || || || || Sbjct 610707 AAGGTTCTTCCA-TCTTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGTGG 610649 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || ||||| || |||||||| || || || | |||||||| || ||||| Sbjct 610648 GATTCCCTCTTTGTCCTGAATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCAC 610589 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| | ||| || || || || |||| ||| || |||||||||||||| Sbjct 610588 GTCCAAAGTGATAGTCTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 610541 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 || || || | ||||| ||||||||||||||| ||||||||||| | ||| | | | | Sbjct 610983 CGTAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCA 610924 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || || | |||||||| |||||||| | | |||||||| || || || || ||||| Sbjct 610923 -TCCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTT 610865 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || |||||||| || || || | |||||| || || ||||| || | ||| || Sbjct 610864 GTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGAT 610805 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||| ||||| |||||||||||||| Sbjct 610804 AGTCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 610769 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || ||||| || || | || | ||||| |||||||||||||| ||||| ||||| | | Sbjct 611223 CCACCTCTCAGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGAC 611164 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | |||||||| |||||||| | | ||| || || || || Sbjct 611163 AAGGTTCTTCCA-TCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGG 611105 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || ||||| || |||||||| ||| || || | |||||||| || ||||| Sbjct 611104 GATTCCCTCTTTGTCCTGAATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTCCAC 611045 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| | ||| ||||| || || |||| || || |||||||||||||| Sbjct 611044 GTCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 610997 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 || ||||| | ||||| |||||||||||||| ||||||||||| | ||| | | | | Sbjct 610527 CGTAACACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCA 610468 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || || | || ||||| |||||||| | | ||| || || || || || || ||||| Sbjct 610467 -TCCTCTAATTGCTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTT 610409 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || |||||||| || || || | ||||||||| || |||||||| | ||| || Sbjct 610408 GTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCGGATGACTCCACGTCCAAAGTGAT 610349 Query 134678 GGTTTTACC 134686 |||||| || Sbjct 610348 GGTTTTTCC 610340 >seq62 Length=53519 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/204 (73%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 ||||| ||||| || ||||||||||| |||| ||| | || || | ||| || || Sbjct 26290 GTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACA-TCCTCCAACTGCTTTCC 26348 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 || | | || | | |||||| || || || || ||||| || || | ||||||| || Sbjct 26349 TGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCCTCAATTTTTGACTT 26408 Query 134636 GACCGCGTCC-AAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || ||| ||| || ||||| | ||||| || || || |||||||| |||||||| Sbjct 26409 AAC--ATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCGGTTAAT 26466 Query 134694 GTTTTAACGAAAATTTGCATTTTG 134717 ||||| ||||| || ||||||||| Sbjct 26467 GTTTTTACGAATATCTGCATTTTG 26490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397401838160