Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5 235 8e-57 >seq5 Length=2463301 Score = 235 bits (260), Expect = 8e-57 Identities = 985/1528 (64%), Gaps = 55/1528 (4%) Strand=Plus/Minus Query 68748 GTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 |||||| ||||| || || ||||| | ||| || || || || |||||||| | || || Sbjct 676009 GTAAATGTTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGA 675950 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 ||||| ||||||||||||| || | |||||| | || || | | || || | Sbjct 675949 AGCAGTAGGCATAGGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGC 675890 Query 68868 TTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACA-----ACATTCCAAAGATCGTAT 68922 || | | | |||||||||| || | || | || |||||||| | ||| | Sbjct 675889 CTTCAATTTATCCCAATCCCAAT-ATTTGTTG-TCCACCTTGACATTCCACATGTCGAAC 675832 Query 68923 TGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCA 68982 || |||||||| | || || || | || || ||||||||||| | | || Sbjct 675831 TGAAGAATTCCTTGGCTAGCTGGACTACCCTGGTAGGTCTCATAAGGTCCGTACACTTGT 675772 Query 68983 GCTAGTTCACA---ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 69039 || | ||| || || | ||| || ||| | ||||| |||||||||||||| | ||| Sbjct 675771 GCCAATTC-CATGGACAT--CTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTA 675715 Query 69040 TTGAGATCTTGTGCTTCTAGACTATCGAATGGATA-----ATGTAA-AAGAATAAATGCA 69093 || | || | || ||| |||| || ||| || ||| ||| || || | Sbjct 675714 TTTAATTCCTTCGC----AGA--ATCGGATTCATATGGGTATCTAAGAAGCATGAAGGTG 675661 Query 69094 TCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCT 69153 |||||||| || || || || || || || ||||| |||||||| || || | |||||| Sbjct 675660 TCTGCCAAGCCTTGTACTCCTATCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCC 675601 Query 69154 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTT- 69212 || | | ||| || ||||| | |||||||||| | | || || || || ||| Sbjct 675600 TCCTGCACAGGGTAGTAATTCCTCTCTATAATTTGGTCCAAGTTACGTG-TAATAATTTT 675542 Query 69213 ---AACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAACAA--ACATATT- 69266 || ||| | ||||| ||||| ||| ||| | | || ||| ||| Sbjct 675541 GGTAATTTCGTAC---AGTTTCTTAAAATTGAATTCTCCTTTTTCCACGTCGACAAATTT 675485 Query 69267 ---CAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTAT 69323 || || | || || | |||||| || || || || | | | ||| | || Sbjct 675484 GCACAACGCGATGGAGGCCAAATTACATACGGCCACTTCGTCTGGGGAAGTATACTCAAT 675425 Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 ||||| ||| || ||||||||||| || ||||||| || | || || ||| Sbjct 675424 AATCTCACAACAGAGGTTACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGC 675365 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 |||||| | || || || | || | ||| ||| ||||| |||||| || | ||| Sbjct 675364 GTTACAAGAATCTTTATACAACATGTAGGGAACACCCGTTTCTATCTGACTTTGCAAAAT 675305 Query 69444 AGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTC---ATA 69500 | ||| | || | | || | || || || | | | | ||| ||| ||| Sbjct 675304 GGCAAACCATA-GATCTT-GCGCC-AGGACAGTTTTTTTGCCCATACCTTCTTCCTCATA 675248 Query 69501 TTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATT 69560 || | |||||| ||||||||| || |||||| ||| || || ||||||||||| Sbjct 675247 TTTTAAGTATAGCTTTTCGAATTCCTCACCCCAAGACTCACTTAACCCTGGACATTCATT 675188 Query 69561 TGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAAT 69620 || |||||||| | ||| | || || || |||| ||||| || || || || | Sbjct 675187 CGGGCACATCAAAGTCCAATTCTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGAC 675128 Query 69621 CCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT-AttttttttA 69678 ||| | ||| ||| || || ||||| | ||| ||| || ||||| || |||||| | Sbjct 675127 CCATACAGC-ATAGAAAAGGTCTCTAGCTCTTAGTTCCTC-TTTCCCGTGATTTTTACGA 675070 Query 69679 AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCC 69738 || || ||||| || | |||||| || ||||||||||| | || | || | | |||| Sbjct 675069 AGGTCTAGAAATTCGAAAATATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCCC 675010 Query 69739 GGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATC 69798 || || || || || |||| ||||| || || | ||| | || |||||||| Sbjct 675009 TTTCTCTTTCCGCCACCTTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATT 674950 Query 69799 GGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA--ACTTCCTCTTGCGCGAA 69856 || | | || || ||| | || || ||||| ||| || | || | | | | || Sbjct 674949 GGCACTAACCCGTTGGATATTCCGTTGGTTCCTCTAATGTAGGAGTT--TTGTCCTCTAA 674892 Query 69857 TATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCA 69916 ||| | | || || ||||| || ||| |||| || || || || |||||| Sbjct 674891 TATCCTGTACCGCTACTCCAATTCCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCA 674832 Query 69917 ATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACA 69976 || || | ||||| || || |||| || |||| ||||| |||||| |||| Sbjct 674831 GCGTCTCGAAAATACCTTCAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACA 674772 Query 69977 TTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTT 70036 |||| | || || | ||| || || ||||| | |||||| || || |||||| Sbjct 674771 TTTGCGGTCTGGGCGTCCCAGAATTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTT 674712 Query 70037 CAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATAT-CCCACTGATGAATTCCTATC 70095 ||| | |||| || || || | ||| ||| | || |||| || || || || || Sbjct 674711 GAGACATAAGATGATACGTCTCTAGCGCTTTTTCCAGATCCCCAATG-TGGATGCCAATG 674653 Query 70096 GCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGG 70155 | || | ||||| || ||| || |||| ||| | | || ||||||| | ||| Sbjct 674652 GATACTCTCATCAGCAGATGTTGTGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGG 674593 Query 70156 TATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATA 70215 || || |||||| ||| || |||||||| || | ||| ||| || || ||| | Sbjct 674592 TAGGACCTTTCCAAAGTCTTGAACCCAAAGTAATCGTAATTAAAATCCCTCGTGTAGTCA 674533 Query 70216 ATAACAGAATTTAGTTTATCCTTATATT 70243 || | |||||| ||||||||| || Sbjct 674532 ATTTCCTTGTTTAGTCTATCCTTATGTT 674505 Score = 161 bits (178), Expect = 1e-34 Identities = 358/529 (68%), Gaps = 10/529 (2%) Strand=Plus/Minus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT-TAGACC 39690 || || || ||||||| |||||||| |||||| || ||||||||| ||| | | | Sbjct 2270167 TGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTTC 2270108 Query 39691 ACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGC 39750 |||| || | |||||| || ||| ||| |||| ||| | ||| || || || Sbjct 2270107 T-GCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATACCCTCCACACA 2270049 Query 39751 TGCAAATGCAACAAGTCTCTCTCCGTA--ACTTG-TATCATTATGTATCCACTTCTGTGC 39807 ||| || || | || ||| | | | ||| |||| || ||||||||| ||| Sbjct 2270048 GGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTT---TATCCACTTGGCTGC 2269992 Query 39808 CCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA-ATGTT 39866 ||| ||||| ||||| || || || |||| || || | ||| || | || | Sbjct 2269991 CCACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCT 2269932 Query 39867 TTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGT 39926 || | || | ||||| || | |||||||||| |||||| | ||||| ||||| | Sbjct 2269931 TTCCTTCTCGTCCTTTATG-TAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATAT 2269873 Query 39927 TTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAAC 39986 |||||| || ||||| || |||||| |||| || |||||||| || | Sbjct 2269872 TTTCAACAGCAATCTGGAAGGAGTAAAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTA 2269813 Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||||| | || |||||||| ||| ||||||||||| || || || || ||||| | Sbjct 2269812 AAAATTTGCTTGCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACA 2269753 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 ||||||| || |||| |||||||| | ||||| | | || || | ||| | | Sbjct 2269752 CATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTAG 2269693 Query 40107 ATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTA 40155 | | || | ||||||||||||||| || ||||| || || |||||||| Sbjct 2269692 ACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTA 2269644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907443355120