Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5 109 5e-19 >seq5 Length=2463301 Score = 109 bits (120), Expect = 5e-19 Identities = 213/312 (68%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 130792 GTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGT 130851 ||||||||| |||||| |||||||||| || ||||||||||| | ||||||| || | Sbjct 676009 GTAAATGTTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGA 675950 Query 130852 TGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCG 130911 || || ||||| ||||| | || ||||| | | |||||| || | || || Sbjct 675949 AGCAGTAGGCATAGGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGC 675890 Query 130912 CTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTG---TTCCACATATCAAA 130968 |||||||| |||||||||||| | | || | | || ||| |||||||| || || Sbjct 675889 CTTCAATTTATCCCAATCCCA-ATATTTGTTG--TCCACCTTGACATTCCACATGTCGAA 675833 Query 130969 TTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACG 131028 || || || |||| || || ||||| | | | | || || ||| | || | Sbjct 675832 CTGAAGAATTCCTTGGCTAGCTGGACTACCCTGGTAGGTCTCATAAGGTCCGTACACTTG 675773 Query 131029 AGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATT 131088 |||| || || |||||||| | ||||| || |||||| |||| |||||| Sbjct 675772 TGCCAATTCCATGGACATCTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTATT 675713 Query 131089 TAATTGTTTCGC 131100 ||||| ||||| Sbjct 675712 TAATTCCTTCGC 675701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933581735696