Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 129 7e-25 seq4 95.1 2e-14 >seq5 Length=2463301 Score = 129 bits (142), Expect = 7e-25 Identities = 964/1539 (63%), Gaps = 44/1539 (3%) Strand=Plus/Minus Query 110471 TGGTCAATGAAG-CGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTC 110529 ||||| |||||| |||| | || | |||||||||||||||| | |||| ||| || || Sbjct 676245 TGGTCGATGAAGGCGCCTCGGTCG-GCCGCCATATCAATGATGTTCTTCTGCTTGATCTC 676187 Query 110530 CCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGA 110589 |||||| || |||||| | ||| | || | || || || |||| |||| Sbjct 676186 CCAAACGGTTTTATAGAGCTCCTTCAAGTCGTTAGGAATTTCGCTAATATATTGGAC--- 676130 Query 110590 ACCCCCCGCCTTCACCATGAGATCCT---TCATATCCTTGGACCAGAGACCAATCTTCTT 110646 || || | | ||||| | || |||| |||| |||||||||| | Sbjct 676129 ACTTCCGTTGTGGGCAATGAGCTGCTGCTTCATGTCCTCATCCCAGAGACCACGATCGAA 676070 Query 110647 GAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAG 110706 |||||| || | ||||| ||| || | || ||||| || || || || Sbjct 676069 GAGGTCCTTCAACAGGTGTGGGTTCACTACGAAGAACTCTCCACTCAGAACCCTCCTGTA 676010 Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | ||||| |||||||| | || || || || | ||||||| || || Sbjct 676009 GTAAATGTTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGA 675950 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| ||||||| || || || | | || | || ||| || | Sbjct 675949 AGCAGTAGGCATAGGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGC 675890 Query 110827 CTTGAGAACATCCCAGTCG---TAGTTGAGCTTGGTTTCACCTTC-----CCACATGTCA 110878 ||| | |||||| || || ||| ||| | |||||| ||||||||| Sbjct 675889 CTTCAATTTATCCCAATCCCAATATTTG---TTG--TCCACCTTGACATTCCACATGTCG 675835 Query 110879 AACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCT 110938 |||||||| | |||||| || ||| ||||| |||| ||||| | || | || Sbjct 675834 AACTGAAGAATTCCTTGGCTAGCTGGACTACCCTGGTAGGTCTCATAAGGTCCGTACACT 675775 Query 110939 TCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998 | |||||||| | | ||||| | || | |||||| ||||| || || | | Sbjct 675774 TGTGCCAATTCCATGGACATCTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTA 675715 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || | ||||| || ||| || ||| ||| ||| | | || || || || Sbjct 675714 TTTAATTCCTTCGCAGAATCGGATTCATATGGGTATCTAAGAAGCATGAAGGTGTCTGCC 675655 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 | ||||| || || | || || |||||||||| | | || || ||| ||| ||| Sbjct 675654 AAGCCTTGTACTCCTATCCCTATGGGTCTGTGTCTCTTGTTGGA---TCGTTCAGCCTCC 675598 Query 111119 ---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175 || || || |||| || || || | | ||| | || |||| ||| || || Sbjct 675597 TGCACAGGGTAGTAATTCCTCTCTATAATTTGGTCCAAGTTACGTGTAATAATTTTGGTA 675538 Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA-AG 111234 ||||| | ||||| | | ||| || | | || | | |||| | |||| | | Sbjct 675537 ATTTCGTACAGTTTCTTAAAATTGAATTCTCCTTTTTCCACGTCGACAAA-TTTGCACAA 675479 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 ||||| || |||||||| || || ||| || || || ||||| | ||| || Sbjct 675478 CGCGATGGAGGCCAAATTACATACGGCCACTTCGTCTGGGGAAGTATACTCAATAATCTC 675419 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 ||| | ||| || || ||||||||||| ||||||||||| |||| ||| || Sbjct 675418 ACAACAGAGGTTACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTACA 675359 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 | ||| || || | ||||||||| ||||| || |||| || | ||| || Sbjct 675358 AGAATCTTTATACAACATGTAGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCAAA 675299 Query 111415 CCAAACATC-GGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGT 111473 ||| | ||| ||| | || ||| | ||| || || || |||| || ||| || Sbjct 675298 CCATAGATCTTGCGCCAGG-ACAGTTTTTTTGCCCATACCTTCTTCCTCATATTTTAAGT 675240 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 111533 | || ||| || ||||||||| | || | ||||| | | || || | Sbjct 675239 ATAGCTTTTCGAATTCCTCACCCCAAGACTCACTTAACCCTGGACATTCATTCGGGCACA 675180 Query 111534 AAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 | || ||| | | ||| | || | ||||||||||||||| || | ||| | | Sbjct 675179 TCAAAGTCCAATTCTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATACAG 675120 Query 111594 ATGAAAAGAGATCTCTA-CACCGAG--CCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 111650 | || || |||||| | | || |||||| || || || || || | || | Sbjct 675119 CATAGAAAAGGTCTCTAGCTCTTAGTTCCTCTT--TC-CCGTGATTTTTACGAAGGTCTA 675063 Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC--- 111707 | || || | ||||| | ||||||||| || | || ||||| | |||||||||| Sbjct 675062 GAAATTCGAAAATATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCCCTTTCTCT 675003 Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 | ||| |||| | |||||| | ||||| | || || || | |||||||| | | Sbjct 675002 TTCCGCCACCTTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTA 674943 Query 111768 TACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATG 111825 || | ||| || || || || | || || ||| ||| | |||| | ||| || Sbjct 674942 ACCCGTTGGATATTCCGTTGGTTCCTCTAATGTAGGAGTTTTGT--CCTCTAATATCCTG 674885 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 | | ||||| || |||||| || || | || |||| | || || | Sbjct 674884 TACCGCTACTCCAATTCCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTC 674825 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 | ||||| | || || || | || | || |||||| || ||||| ||||| Sbjct 674824 GAAAATACCTTCAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTTGCGG 674765 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG 111984 ||| || || |||| |||||| | || ||||||||||| Sbjct 674764 TCTGGGCGTCCCAGAATTGAACAACGTAGGTGTTGCGTG 674726 >seq4 Length=3285730 Score = 95.1 bits (104), Expect = 2e-14 Identities = 195/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 || || |||||||| |||||||||||||| |||||||| || || ||| || Sbjct 1890081 CCAACTGCATCAATTTCATCAATGAAGACGATACATGGCGCATGTTTTTTGGCTGCTTGG 1890022 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 ||||| || | | |||| ||||||| ||||| || ||||| ||| |||| | | | | Sbjct 1890021 AAGAGCTCTCTTATCCTTCTGGCACCAACACCTACGAACATTTCCTCAAATTCGGAGCCT 1889962 Query 11744 GAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTT 11803 || || ||||| || ||||| | ||| ||||| || |||| || | | || ||| Sbjct 1889961 GATGCTTGTATGAAAGGAACATTCGCTTCCCCCGCTATCGCTCTAGCAATTAACGTTTTT 1889902 Query 11804 CCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAA 11863 || ||||| || | ||| | || || || || | ||||||||| || | Sbjct 1889901 CCTGTACCCGGTTCACCGGACAGGAGTATCCCCTTCGGTAACTTGGCACCTATTTTTGTA 1889842 Query 11864 TATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTT 11913 || | || | | ||| | | |||| | || ||||||||||| | ||| Sbjct 1889841 AATTTATCAGAATTCTTTAAATAATCAATTATTTCTTCAAGTTCTTGTTT 1889792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030759636800