Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11 87.8 2e-12 seq4 87.8 2e-12 >seq11 Length=1094695 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 163877 TACGAAGGCGCTACAGTTTTGGACGCCCAAAAAGGGGCGTAT-TATACCCCGATTACAGC 163935 |||||||| ||||| ||||| || || ||||||| || || | ||| ||| | | Sbjct 21930 TACGAAGGAGCTACCGTTTTAGAACCCATAAAAGGGTACTACATAGAACCC-ATTTCGAC 21988 Query 163936 TCTAGATTTTGAAGCACTGTACCCATCTATCATGATGGCACACAATCTGTGTTATTC 163992 || ||||||| | | |||||||||||||||||||| |||||||||||||| || || Sbjct 21989 GCTCGATTTTGCATCCCTGTACCCATCTATCATGATAGCACACAATCTGTGCTACTC 22045 >seq4 Length=3285730 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG---TTGATTTTCGCGAGCGAC 9753 ||| || |||||||| ||||||||||||||||| ||||| || |||| | || | Sbjct 1890082 TCCAACTGCATCAATTTCATCAATGAAGACGATACATGGCGCATGTTTTTTG---GCTGC 1890026 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 || ||||| || | || | |||| || ||||| || ||||| ||| |||| | | Sbjct 1890025 TTGGAAGAGCTCTCTTATCCTTCTGGCACCAACACCTACGAACATTTCCTCAAATTCGGA 1889966 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 | | || ||| ||||| || ||||| | ||| ||||| || |||| || | | || Sbjct 1889965 GCCTGATGCTTGTATGAAAGGAACATTCGCTTCCCCCGCTATCGCTCTAGCAATTAACGT 1889906 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAG 9903 || || ||||| || | ||| | ||||| Sbjct 1889905 TTTTCCTGTACCCGGTTCACCGGACAGGAG 1889876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259648059920