Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5 141 2e-28 >seq5 Length=2463301 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || | ||| | ||||| || |||||||||||||| || | | ||| |||||||| Sbjct 611209 TAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTTCCATC 611150 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| || ||||| || || ||||| | ||||||||||| || | ||| || ||||| Sbjct 611149 TTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTC 611090 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| || || ||| || ||||| || ||||| || || || || | |||||| || Sbjct 611089 CTGAATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATGGT 611030 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| || ||||| || || | ||||| Sbjct 611029 CTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 610997 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || | ||| | || || || ||||||||||| || || | | ||| |||||||| Sbjct 610753 TAGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATC 610694 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| || ||||| || || || || | ||||||||||| || | ||| || ||||| Sbjct 610693 TTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTC 610634 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| || || ||||| ||||| || ||||| || || || || | |||||| || Sbjct 610633 CTGAATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATAGT 610574 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| |||||||| || || | ||||| Sbjct 610573 CTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 610541 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 || ||| | ||| | ||||| || ||||||||||| || || | | ||| |||||||| Sbjct 610981 TAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATC 610922 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || | || ||||| || || || || | ||| || ||||| || | ||| || ||||| Sbjct 610921 CTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTTGTC 610862 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||| || || ||||| ||||| || |||||||| || || || | |||||| || Sbjct 610861 CTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGATAGT 610802 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| || || || || || | ||||| Sbjct 610801 CTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 610769 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || ||||||||||| || || | | ||| |||||||| || | |||||||| Sbjct 610509 GTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCCTCTAATTGCTTGCCA 610450 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || ||||| | ||||||||||| || | ||| || |||||||| || || ||| Sbjct 610449 GCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTAGCCTTC 610390 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 || ||||| || ||||| || || || || | |||||| || ||||| Sbjct 610389 ACATTTTCAATTGTGTCGGATGACTCCACGTCCAAAGTGATGGTTTTTCC 610340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149653441670