Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 >seq5 Length=2463301 Score = 107 bits (118), Expect = 2e-18 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 39055 AAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCG 39114 || || ||||| | |||| || || |||| ||| || ||||| || ||||| || Sbjct 611226 AAACCACCTCTCAGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCA 611167 Query 39115 G-CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 | |||| |||| | | || || | |||||||| ||||| ||||| | ||| ||||| || Sbjct 611166 GACAAG-GTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGG 611108 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACT 39232 |||| | | |||||||||| |||||| ||| | | | | ||| ||| |||| Sbjct 611107 TGGG-ATTCCCTCTTTGTCCTGAATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACT 611049 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||||| ||||| | |||||||| || || || || || |||||||| Sbjct 611048 CCACGTCCAAAGTGATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 610997 Score = 89.7 bits (98), Expect = 4e-13 Identities = 171/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || ||||| | |||| || || |||| || || |||| Sbjct 610782 ACGAAAATTTG--CATACCACCTCTGAGACGTAGTACTAAGTGTAATGTAGATTCCTTTT 610725 Query 39101 GTATATTATAATCGG-CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGA 39159 | || || || || | |||| |||| | | || || | |||||||| ||||| || || Sbjct 610724 GGATGTTGTAGTCAGACAAG-GTTCTTCCATCTTCCAATTGTTTGCCAGCAAAAATGAGT 610666 Query 39160 CGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 | ||| ||||| |||||| | | |||||||||| ||||| || | | | | Sbjct 610665 CTCTGTTGGTCAGGTGGG-ATTCCCTCTTTGTCCTGAATTTTGGCCTTCACATTTTCAAT 610607 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 ||| ||| ||||||||||||| |||||| | |||||||| || || || || || || Sbjct 610606 CGTGTCGGATGACTCCACGTCCAAAGTGATAGTCTTTCCCGTTAGAGTCTTCACGAAAAT 610547 Query 39279 TTGCAT 39284 |||||| Sbjct 610546 TTGCAT 610541 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || |||| ||| ||||||||||| |||| ||| || |||| Sbjct 610554 ACGAAAATTTG--CATACCACCTCGTAAACGTAACACCAAGTGTAAGGTGGATTCCTTTT 610497 Query 39101 GTATATTATAATC-GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGA 39159 | || || || || | |||| |||| | | || || | || ||||| ||||| ||||| Sbjct 610496 GGATGTTGTAGTCAGACAAG-GTTCTTCCATCCTCTAATTGCTTGCCAGCAAAAATAAGT 610438 Query 39160 CGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 | ||| ||||| |||||| | | |||||||||| ||||| || | | | | Sbjct 610437 CTCTGTTGGTCAGGTGGG-ATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCAAT 610379 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCC 39257 || ||| ||||||||||||| ||||| ||||||| Sbjct 610378 TGTGTCGGATGACTCCACGTCCAAAGTGATGGTTTTTCC 610340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544772856254