Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq10 82.4 6e-11 >seq10 Length=1594295 Score = 82.4 bits (90), Expect = 6e-11 Identities = 207/311 (67%), Gaps = 3/311 (1%) Strand=Plus/Minus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAA-TCCTCAGCGGTTCCACGTGGTCAAGG 29668 |||||| |||| ||| ||| | | ||||| | | | ||| || | | ||||| | Sbjct 1200575 TGGGAACGGGTAGGGGATCC-TGTTTAGCTGCACTTTTAAGCTGT-CTATGTGGTTGTTG 1200518 Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 ||||||||||||| |||| |||| | |||| | | || | || | || || Sbjct 1200517 TAGACGTGAGCATTGCCCAAAATGTGTATGAACTGTGCAGGCTGTAAATTGCACACCTGG 1200458 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 || ||||||| |||| | || ||| || ||||| ||||| ||||| || |||| | Sbjct 1200457 GCAATCATGTGTGTGAATATGGAATAGGAAGCAATGTTGAAGGGGACCCCAAGACCCAAG 1200398 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 29848 || | ||||| || || | ||| || || | || ||| |||||||| ||||| Sbjct 1200397 TCACAAGACCTTTGATACATAATGCAGGATAGTTTCCCATCGAAAACGTAAAATTGACAT 1200338 Query 29849 ATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACG 29908 | | ||| || ||||| | ||||| || |||| || || ||||| ||||| | | Sbjct 1200337 AAGATATGACAAGGAGGTAATGCCATCTGATCCAAATCCTTTACATTCCATGCACAAAGG 1200278 Query 29909 ATGATGCGCCT 29919 || || | ||| Sbjct 1200277 ATAATTCTCCT 1200267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162417881988