Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5 118 9e-22 >seq5 Length=2463301 Score = 118 bits (130), Expect = 9e-22 Identities = 365/561 (65%), Gaps = 9/561 (2%) Strand=Plus/Minus Query 4563 TGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA--TTAAAC 4620 |||| |||||| |||| ||||| || |||||| || || | ||| ||| || Sbjct 2270167 TGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGT-- 2270110 Query 4621 CTCT-CTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 ||| ||| |||| |||||| ||||| || ||| ||| | || || || || Sbjct 2270109 -TCTGCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATACCCTCCACA 2270051 Query 4680 GCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAAT 4739 |||| ||||||| | | || ||| ||| | || || ||||| || | Sbjct 2270050 CAGGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGG---TATCGTTTATCCACTTGGCT 2269994 Query 4740 GCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTT 4799 ||||| ||||| ||||| || ||||| | | || |||| ||| | || || Sbjct 2269993 GCCCACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATT 2269934 Query 4800 TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATA 4859 |||| ||| | || || ||||||||| | ||||||| | || || || ||| Sbjct 2269933 CTTTCCTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATA 2269874 Query 4860 TTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTA 4919 ||||| | ||||||||| || |||||| | || || || | ||| |||| | Sbjct 2269873 TTTTCAACAGCAATCTGGAAGGAGTAAAATTTCTTTGCCTCCGTAATTTGCACTTGGCGT 2269814 Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 ||||| | | |||| ||||| || || || ||||| ||||| || || ||||| Sbjct 2269813 AAAAATTTGCTTGCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAAC 2269754 Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTA 5039 ||||| ||| || | | ||| | || | ||||| | | |||||| || Sbjct 2269753 ACATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTA 2269694 Query 5040 GTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAA 5099 | || |||| ||||||| | ||||| || |||||||||||||||||||| | | ||| Sbjct 2269693 GACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCAC 2269634 Query 5100 ATATCAGGATACTGAATCGGA 5120 | || |||||| ||| ||| Sbjct 2269633 ACGTCTGGATACAAAATGGGA 2269613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048777662614