Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 248 1e-60 >seq5 Length=2463301 Score = 248 bits (274), Expect = 1e-60 Identities = 966/1489 (65%), Gaps = 51/1489 (3%) Strand=Plus/Minus Query 77156 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGA 77215 |||||| ||||| || || ||||| | ||| || ||||| || | |||||| | || || Sbjct 676009 GTAAATGTTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGA 675950 Query 77216 AGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATC 77275 |||||| ||||||||||||| || | |||||| | || || | | || || | Sbjct 675949 AGCAGTAGGCATAGGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGC 675890 Query 77276 TTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACA-----ACATCCCAAAGATCGTAT 77330 || | | | |||||||||| || || | | || |||| ||| | ||| | Sbjct 675889 CTTCAATTTATCCCAATCCCAAT-ATTTGTTG-TCCACCTTGACATTCCACATGTCGAAC 675832 Query 77331 TGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCA 77390 || |||||||| | ||||| || | || || ||||||||||| | || Sbjct 675831 TGAAGAATTCCTTGGCTAGCTGGACTACCCTGGTAGGTCTCATAAGGTCCGTACACTTGT 675772 Query 77391 GCTAGTTCACA---AC-TCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTT 77446 || | ||| || || || ||||| || | ||||| |||||||||||||| | || Sbjct 675771 GCCAATTC-CATGGACATC---TCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTT 675716 Query 77447 ATTGAGATCTTGTGCTTCAATACTAT-CAAACGGATAATGTAA-AAGAATAAAGGCATCT 77504 ||| | || | || ||| || || | || || | ||| ||| || |||| ||| Sbjct 675715 ATTTAATTCCTTCGCAG-AATCGGATTCATATGGGTA-TCTAAGAAGCATGAAGGTGTCT 675658 Query 77505 GCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCT 77564 || || || || ||||| || || || ||||| |||||||| ||||| || ||| || Sbjct 675657 GCCAAGCCTTGTACTCCTATCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCCTCC 675598 Query 77565 GGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTC---TAACAACTACTTTA 77621 | | ||| || ||||| | |||||||||| | | || | ||| || | || Sbjct 675597 TGCACAGGGTAGTAATTCCTCTCTATAATTTGGTCCAAGTTACGTGTAATAATTTTGGTA 675538 Query 77622 ACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTATAAC------AAACATGTTC 77675 | ||| | ||||| ||||| ||| ||| | | || ||| || | Sbjct 675537 ATTTCGTAC---AGTTTCTTAAAATTGAATTCTCCTTTTTCCACGTCGACAAATTTGCAC 675481 Query 77676 AAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATC 77735 || || || || || | |||||| || || || || | | | | ||| | || ||| Sbjct 675480 AACGCGATGGAGGCCAAATTACATACGGCCACTTCGTCTGGGGAAGTATACTCAATAATC 675421 Query 77736 TCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTG 77795 || ||| || ||||||||||| || || |||| || | ||||||| ||| || Sbjct 675420 TCACAACAGAGGTTACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTA 675361 Query 77796 CATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGAT 77855 || || || ||||| | || | ||| || ||||| ||||| || | ||| | Sbjct 675360 CAAGAATCTTTATACAACATGTAGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCA 675301 Query 77856 TTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCT-CTT--TCATATTGA 77912 ||| | || ||| || | | || ||| | | | | || ||| ||||||| Sbjct 675300 AACCATA-GA-TCTTGCGCC-AGGACAGTTTTTTTGCCCATACCTTCTTCCTCATATTTT 675244 Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 |||||| ||| ||||| || |||||| ||| || || || |||||||| ||| Sbjct 675243 AAGTATAGCTTTTCGAATTCCTCACCCCAAGACTCACTTAACCCTGGACATTCATTCGGG 675184 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 |||||||| | ||| | || ||| || |||| ||||| || || ||||| | |||| Sbjct 675183 CACATCAAAGTCCAATTCTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCAT 675124 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT-ATTCTTTTTAAGATC 78091 | |||| || || |||| | ||| |||| || ||||| || ||| || ||| || Sbjct 675123 ACAGCATAGAAAAGGTCTCTAGCTCTTAGTTCCTC-TTTCCCGTGATTTTTACGAAGGTC 675065 Query 78092 GAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCG 78151 ||||| || | |||||| || ||||||||||| | || | ||| | ||| || Sbjct 675064 TAGAAATTCGAAAATATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCCCTTTCT 675005 Query 78152 TTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAAT 78211 || || || || |||| |||||| || || | ||| | || |||| |||||| | Sbjct 675004 CTTTCCGCCACCTTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCAC 674945 Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATA--ACTTCCACTTG--CGCGAATAT 78267 | ||||| ||| |||| || ||||| ||| || | || ||| | | ||||| Sbjct 674944 TAACCCGTTGGATATTCCGTTGGTTCCTCTAATGTAGGAGTT----TTGTCCTCTAATAT 674889 Query 78268 TACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATG 78327 | | || || ||||| || ||| | || || || ||||| |||||| | Sbjct 674888 CCTGTACCGCTACTCCAATTCCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCG 674829 Query 78328 TATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTT 78387 | ||| | ||||| || || ||| | |||| ||||| |||||| ||||||| Sbjct 674828 TCTCGAAAATACCTTCAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTT 674769 Query 78388 GATG-ATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCA 78446 | | || | || || | ||| || || || || | ||| || ||||| |||||| | Sbjct 674768 GCGGTCTGGGC-GTCCCAGAATTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTTGA 674710 Query 78447 GAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGT-CCCATTGATGAATTCCTACCGC 78505 || | |||| || || || | ||| ||| | | |||| || || || || | | Sbjct 674709 GACATAAGATGATACGTCTCTAGCGCTTTTTCCAGATCCCCAATG-TGGATGCCAATGGA 674651 Query 78506 TACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTA 78565 ||| | ||||| || ||| || |||||||| | |||| ||||||| | | ||| Sbjct 674650 TACTCTCATCAGCAGATGTTGTGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGGTA 674591 Query 78566 TGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTC 78614 || |||||||||| || || ||||| || | ||| ||| || ||| Sbjct 674590 GGACCTTTCCAAAGTCTTGAACCCAAAGTAATCGTAATTAAAATCCCTC 674542 Score = 116 bits (128), Expect = 5e-21 Identities = 355/540 (66%), Gaps = 14/540 (3%) Strand=Plus/Minus Query 48156 TGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT-TAGTCC 48214 || ||||||||||||| |||||||| |||||| || ||||| || ||| | || | Sbjct 2270167 TGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTTC 2270108 Query 48215 ACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGC 48274 | || || | |||||| || || |||| |||| ||| | || || || || Sbjct 2270107 T-GCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATACCCTCCACACA 2270049 Query 48275 CGCAAATGCGGTAAGTCTCTCTCC---GTAACTGGCTTCGTTGTGTATCCACCGTTG--T 48329 ||| || | || ||| | | | ||| ||||| ||||||| ||| | Sbjct 2270048 GGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTT---TATCCAC--TTGGCT 2269994 Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 ||||| || || ||||| || || || |||| || || | ||| || || Sbjct 2269993 GCCCACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATT 2269934 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 |||| || || || | ||| | |||||||| | |||||| | || ||||| ||| Sbjct 2269933 CTTTCCTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATA 2269874 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC-CGT 48508 ||||||| || ||||| || |||||| | || || || || || || | ||| Sbjct 2269873 TTTTCAACAGCAATCTGGAAGGAGTAAAATTTCTTTGCCTCCGTAATTTGCACTTGGCGT 2269814 Query 48509 ACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAA 48568 | ||| | | | || ||||| || || ||||||||||| || || || || || || Sbjct 2269813 AAAAATTTGCTT-GCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAA 2269755 Query 48569 TACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTT 48628 |||||||| || |||| |||||| || | | | ||| | | || || | ||| | Sbjct 2269754 CACATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCT 2269695 Query 48629 TGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688 || | || | ||||||||||||||| || || || || |||||||| || | || ||| Sbjct 2269694 AGACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCA 2269635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667428029120