Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 233 3e-56 >seq5 Length=2463301 Score = 233 bits (258), Expect = 3e-56 Identities = 978/1520 (64%), Gaps = 39/1520 (3%) Strand=Plus/Minus Query 75751 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGA 75810 |||||| ||||| || || ||||| | ||| || ||||| || | |||||| | || || Sbjct 676009 GTAAATGTTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGA 675950 Query 75811 AGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATC 75870 |||||| ||||||||||||| || | |||||| | || || | | || || | Sbjct 675949 AGCAGTAGGCATAGGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGC 675890 Query 75871 TTTTAGATATTTCCAATCCCAAAGATCTGATGGTACA-----ACATCCCAGAGATCGTAT 75925 || | | | |||||||||| || || || | || |||| ||| | ||| | Sbjct 675889 CTTCAATTTATCCCAATCCCAAT-ATTTGTTG-TCCACCTTGACATTCCACATGTCGAAC 675832 Query 75926 TGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCA 75985 || |||||||| | |||||| || | || || || |||| |||| | || Sbjct 675831 TGAAGAATTCCTTGGCTAGCTGGACTACCCTGGTAGGTCTCATAAGGTCCGTACACTTGT 675772 Query 75986 GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTA 76045 || | ||| | ||| || ||| | ||||| |||||||||||||| | ||||| Sbjct 675771 GCCAATTCCATGGACATCTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTATTT 675712 Query 76046 AGATCTTGCGCTTCAAGACTA----TCAAAAGGATAATGTAA-AAGAATAAATGCATCTG 76100 | || | ||| ||| | ||| | || || | ||| ||| || || | |||| Sbjct 675711 AATTCCTTCGC----AGAATCGGATTCATATGGGTA-TCTAAGAAGCATGAAGGTGTCTG 675657 Query 76101 CTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTG 76160 | | || || ||||| || || || ||||| |||||||| ||||| |||||| || Sbjct 675656 CCAAGCCTTGTACTCCTATCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCCTCCT 675597 Query 76161 GAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCA 76220 | | |||||| ||||| | |||||||||| | | || | || | ||| | Sbjct 675596 GCACAGGGTAGTAATTCCTCTCTATAATTTGGTCCAAGTTACGTGTAATAATTTTGGTAA 675537 Query 76221 CGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATCACAA--ACATATTAAGA----G 76274 || | ||||| ||||| |||| ||| | | ||| ||| ||| | | Sbjct 675536 TTTCGTACAGTTTCTTAAAATTGAATTCTCCTTTTTCCACGTCGACAAATTTGCACAACG 675477 Query 76275 CTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCG 76334 | || || || | |||||| ||||| || || | | | ||| | || ||||| Sbjct 675476 CGATGGAGGCCAAATTACATACGGCCACTTCGTCTGGGGAAGTATACTCAATAATCTCAC 675417 Query 76335 TGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG 76394 || || |||||||| || || || || | || | ||||||| ||| |||||| | Sbjct 675416 AACAGAGGTTACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTACAAG 675357 Query 76395 AGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCC 76454 | || ||||| | | | ||| || ||||| ||||| || | ||| | || Sbjct 675356 AATCTTTATACAACATGTAGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCAAACC 675297 Query 76455 AGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCT-CTT--TCATATTGTGTAT 76511 | | || ||| || | | || ||| | | | | || ||| ||||||| | | Sbjct 675296 ATA-GA-TCTTGCGCC-AGGACAGTTTTTTTGCCCATACCTTCTTCCTCATATTTTAAGT 675240 Query 76512 ATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACA 76571 ||| | ||| ||||| || |||||| ||| || || |||||||||||||| |||| Sbjct 675239 ATAGCTTTTCGAATTCCTCACCCCAAGACTCACTTAACCCTGGACATTCATTCGGGCACA 675180 Query 76572 TCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAG 76631 |||| | ||| | || ||| || || | ||||| || || ||||| | ||||| || Sbjct 675179 TCAAAGTCCAATTCTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATACAG 675120 Query 76632 CAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT-ATTCTTTTTAAGATCTAGG 76690 || || || |||| | ||| |||| || ||||| || ||| || ||| ||||| Sbjct 675119 CATAGAAAAGGTCTCTAGCTCTTAGTTCCTC-TTTCCCGTGATTTTTACGAAGGTCTAGA 675061 Query 76691 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTA 76750 || || | |||||| || ||||||||||| | || | || | ||| || || Sbjct 675060 AATTCGAAAATATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCCCTTTCTCTTT 675001 Query 76751 TTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATG 76810 || || || |||| |||||| || || | ||| | || |||| |||||| | | Sbjct 675000 CCGCCACCTTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTAAC 674941 Query 76811 CCGTTAGATGTACCATTTGTTCCAGAAATATA--ACTTCCACATGCACGAATATTACTAA 76868 ||||| ||| | || || ||||| ||| || | || | | | ||||| | Sbjct 674940 CCGTTGGATATTCCGTTGGTTCCTCTAATGTAGGAGTT--TTGTCCTCTAATATCCTGTA 674883 Query 76869 TAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCAT 76928 | || || ||||| || ||| |||| || || || || |||||| || || Sbjct 674882 CCGCTACTCCAATTCCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTCGA 674823 Query 76929 AGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG-A 76987 | || || || || |||| | |||| ||||| |||||| |||||||| | Sbjct 674822 AAATACCTTCAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTTGCGGTC 674763 Query 76988 TGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGT 77047 || | || || | ||| ||||| ||||| | ||| || || || |||||| ||| | Sbjct 674762 TGGGC-GTCCCAGAATTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTTGAGACATA 674704 Query 77048 AGATTGTATGTTTCAATAACTGCTTCTATAT-CCCATTGATGAATTCCTACAGCGACACG 77106 |||| || || || | || ||| | || |||| || || || || | | || | Sbjct 674703 AGATGATACGTCTCTAGCGCTTTTTCCAGATCCCCAATG-TGGATGCCAATGGATACTCT 674645 Query 77107 CATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTT 77166 ||||| || ||| || |||| ||| | | |||| ||||||| | | ||| || | Sbjct 674644 CATCAGCAGATGTTGTGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGGTAGGACCT 674585 Query 77167 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGA 77226 ||||||||| || || ||||| || | ||| ||| || || ||| ||| || Sbjct 674584 TTCCAAAGTCTTGAACCCAAAGTAATCGTAATTAAAATCCCTCGTGTAGTCAATTTCCTT 674525 Query 77227 ATTTAGTTTGTCCTTATATT 77246 |||||| | ||||||| || Sbjct 674524 GTTTAGTCTATCCTTATGTT 674505 Score = 136 bits (150), Expect = 6e-27 Identities = 357/538 (66%), Gaps = 10/538 (2%) Strand=Plus/Minus Query 46645 TGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT-TAGTCC 46703 || || |||||||||| |||||||| |||||| || ||||| ||| ||| | || | Sbjct 2270167 TGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTTC 2270108 Query 46704 ACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGC 46763 |||| || | |||||| ||||| |||| |||| ||| | || || || ||| Sbjct 2270107 T-GCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATACCCTCCACACA 2270049 Query 46764 CGCGAATGCGACAAGTCTCTCTCC---GTAACTGGCATCATTATGAATCCACCTTTGAGC 46820 || || || | || ||| | | | ||| ||| || |||||| | || Sbjct 2270048 GGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTTT---ATCCACTTGGCTGC 2269992 Query 46821 CCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 46880 ||| || || ||||| || || || |||| || || | ||| || || | Sbjct 2269991 CCACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCT 2269932 Query 46881 ttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTT 46940 ||| | || || | || | |||||||| | |||||| | ||||| || || || Sbjct 2269931 TTCCTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATT 2269872 Query 46941 TTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT-GTAC 46999 ||||| ||| ||||| || |||||| |||| || ||||| || || | ||| Sbjct 2269871 TTCAACAGCAATCTGGAAGGAGTAAAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAA 2269812 Query 47000 AAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATA 47059 ||| | | | | ||||| || ||| ||||||||||| || || || || ||||| | Sbjct 2269811 AAATTTGCTT-GCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACA 2269753 Query 47060 CATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTG 47119 ||||||| || |||| |||||||| | | | ||| | | || || | ||| | | Sbjct 2269752 CATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTAG 2269693 Query 47120 ATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCA 47177 | | || | |||||||||||||||||| ||||| || |||||||| || | || ||| Sbjct 2269692 ACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCA 2269635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712932991954560