Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5 113 1e-19 >seq5 Length=2463301 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| || |||||||||||||| || | || ||||| |||||||| | ||| || Sbjct 610737 GTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCA 610678 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || || ||||| ||||| | | |||||| || || || |||||||| || Sbjct 610677 GCAAAAATGAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTGGCCTTC 610618 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | |||| || ||| || || | ||| ||||| || ||||| |||||| Sbjct 610617 ACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATAGTCTTTCCCGTTAGAGTC 610558 Query 152088 TTCACGAAGACCTGCAT 152104 |||||||| | ||||| Sbjct 610557 TTCACGAAAATTTGCAT 610541 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || || ||||||||||| || || | || ||||| |||||||| | ||| || Sbjct 611193 GTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCA 611134 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || ||||| ||||| ||||| | | |||||| || || || |||||||| ||| Sbjct 611133 GCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTCGCTTTT 611074 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | |||| || ||| || || | ||| || || || ||||| || ||| Sbjct 611073 ACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATGGTCTTTCCCGTTAGGGTC 611014 Query 152088 TTCACGAAGACCTGCAT 152104 |||||||| | ||||| Sbjct 611013 TTCACGAAAATTTGCAT 610997 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || || |||||||||||||| || | || ||||| ||||| |||| ||| || Sbjct 610965 GTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCCTCTAATTGTTTGCCA 610906 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || || || ||||| || | | |||||| || || || |||||||| || Sbjct 610905 GCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTTGTCCTGAATTTTAGCCTTC 610846 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | |||| || ||| || || | ||| ||||| || ||||| || || Sbjct 610845 ACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGATAGTCTTTCCCGTTAGGGTT 610786 Query 152088 TTCACGAAGACCTGCAT 152104 |||||||| | ||||| Sbjct 610785 TTCACGAAAATTTGCAT 610769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153818464234018