Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq14 293 2e-74 seq5 113 5e-20 >seq14 Length=2283415 Score = 293 bits (324), Expect = 2e-74 Identities = 230/274 (84%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 8344 TCTCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCC 8402 ||||||||| ||||||||||||||||||||||| | |||| || ||||||||| ||| Sbjct 153237 TCTCACTCTTGTTGCCCAGGCTGGAGTGCAGTGACGCAGTCTCGGCCCACTGCAACTTCC 153178 Query 8403 GCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCA 8462 |||||| ||||| ||| ||||||||||||||||||| ||||| |||||||||||| | Sbjct 153177 GCCTCCAGGGTTGAAGTGCTTCTCCTGCCTCAGCCTCCCCAGTAGTTGGGATTACAGGTA 153118 Query 8463 AAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTG 8522 |||||| ||| ||||||||||||||||||| |||||| |||||| |||| || Sbjct 153117 CCCACCACCATGCCCCGCTAATTTTTGTATTTTTATTAGAGATGGGGTTTTGCCATAGTG 153058 Query 8523 GCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTG 8582 ||||||||||||| |||||||||||||| |||||| || ||||| ||||||||| || Sbjct 153057 TCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCACCTCGACCTCCCAAATTG 152998 Query 8583 CTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 ||||||||||||| |||||||| |||||||||| Sbjct 152997 CTGGGATTACAGGTGTGAGCCACTGCGCCTGGCC 152964 Score = 150 bits (166), Expect = 2e-31 Identities = 215/305 (70%), Gaps = 31/305 (10%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGC-CTGATCTCCGCTCACTGCAACCTCC 8402 ||||||||||| ||||| |||||||||||||| | |||| ||| |||||| ||| | Sbjct 152904 TCTCACTCTGTCGCCCAAGCTGGAGTGCAGTGATGCAAATCTTGGCTGACTGCAGCCTTC 152845 Query 8403 GCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCA 8462 ||||| ||| ||| | || |||| | ||||| ||| ||||||||| || | | || Sbjct 152844 ACCTCCTGGGCTCAGGTGATCCTCCCACTTCAGCTTCCTGAGTAGCTGTGACTGGA--CA 152787 Query 8463 AAAGCCACCACGCCAAGCTA-----------ATTTTT----------------GTATTTT 8495 | | ||||||||| |||| ||| || ||||||| Sbjct 152786 CACGTCACCACGCCCAGCTTTATTATTTATTATTATTAGTAGTAGTAGTAGTAGTATTTT 152727 Query 8496 TAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTG 8555 ||||||||| ||||||| |||| || ||||||||||||||| |||||| |||| | Sbjct 152726 TAGTAGAGACAGGGTTTTGCCATATTTTCCAGGCTGGTCTCGAGCTCCTGGGCTCAAGCA 152667 Query 8556 ATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGC 8615 ||| | ||||| ||||| ||| |||||||||||||||| |||| |||| | |||| Sbjct 152666 ATCTCCTGGCCTCAACCTCCGAAACTGCTGGGATTACAGGCGTGAG-CACCACATTTGGC 152608 Query 8616 CCTTT 8620 || || Sbjct 152607 CCATT 152603 Score = 140 bits (154), Expect = 3e-28 Identities = 92/102 (90%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 8514 ACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCT 8573 |||| |||| || ||||||||| |||||||||||||| |||||||||| ||| |||||| Sbjct 143815 ACCACATTGGTCAAGCTGGTCTCCAACTCCTGACCTCAGGTGATCCACCCGCCCCGGCCT 143756 Query 8574 CCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGC 8615 ||||||||||||||||||||||| ||||||||| |||||||| Sbjct 143755 CCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCTGGC 143714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/128 (76%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 8484 TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 8543 ||||| | |||||| ||||| ||||| | | |||| || || |||| ||||||| Sbjct 145525 TTTTTTTCTTTTTAA-AGAGATAGGGTATTGCTGTGTTACTCAAGCCAGTCTTGAACTCC 145467 Query 8544 TGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCC 8603 || ||||| | |||| || |||| |||||||||||||||||| ||| || | |||||| Sbjct 145466 TGGCCTCAAGCAATCCTCCCACCTCAGCCTCCCAAAGTGCTGGGCTTATAGACGTGAGCC 145407 Query 8604 ACCGCGCC 8611 | ||||| Sbjct 145406 AGTGCGCC 145399 >seq5 Length=2463301 Score = 113 bits (124), Expect = 5e-20 Identities = 179/255 (70%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 23777 TTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCT 23836 |||| || | || |||| || |||||| | || || || |||||||||| |||||||| Sbjct 2269917 TTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATTTTCAACAGCAATCT 2269858 Query 23837 GAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTA 23896 | || ||||| | || || | | ||| || | |||||| | | |||| Sbjct 2269857 GGAAGGAGTAAAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAAAAATTTGCTTGCTA 2269798 Query 23897 AATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAAT 23956 ||||||| ||||| |||||||| || || |||||||| | |||| |||||| |||| Sbjct 2269797 AATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACACATGTTTTATGAAAT 2269738 Query 23957 GTCTTTCATCAGTTGA--TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTC 24014 || |||||| || | |||||||| |||| || | ||| | || || |||| ||| Sbjct 2269737 GTTTTTCAT--TTTCATTTAATTTTTCGAAATCTTTCAAATCGCTAGACAAGTCAATTTC 2269680 Query 24015 ATCAACTGTCCAAAA 24029 ||| ||||||| || Sbjct 2269679 TTCAGCTGTCCAGAA 2269665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521486970061200