Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F000725905.1_202014-07-21] 158 sequences; 27,817,468 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5 141 2e-28 seq62 93.3 1e-13 >seq5 Length=2463301 Score = 141 bits (156), Expect = 2e-28 Identities = 150/195 (77%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || || ||||| || ||||| | || ||||| || ||| Sbjct 611000 CAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCCGAC 611059 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || |||||||||||||| |||||||| || ||||| || Sbjct 611060 ACGATTGAAAATGTAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAACAG 611119 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||||| || || || ||||| | ||||||||||| || |||| | || |||||| | Sbjct 611120 AGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAAC-CTTGTCTGACTATAACAT 611178 Query 178103 CCAAAAAGAATCAAC 178117 |||||| ||||| || Sbjct 611179 CCAAAAGGAATCCAC 611193 Score = 134 bits (148), Expect = 3e-26 Identities = 149/196 (76%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| ||||| || ||||| || ||||| | || ||||| || ||| Sbjct 610544 CAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCCGAC 610603 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || |||||||||||||| |||||||| || ||||| || Sbjct 610604 ACGATTGAAAATGTGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAACAG 610663 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| || || || || ||||| | ||||||||||| || |||| | || || ||| | Sbjct 610664 AGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAAC-CTTGTCTGACTACAACAT 610722 Query 178103 CCAAAAAGAATCAACA 178118 |||||| ||||| ||| Sbjct 610723 CCAAAAGGAATCTACA 610738 Score = 132 bits (146), Expect = 1e-25 Identities = 148/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || || ||||| || ||||| | || ||||| || ||| Sbjct 610772 CAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCTGAC 610831 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || |||||||||||||| |||||||| || || |||||| Sbjct 610832 ACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAGCAA 610891 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| || || || || ||||| | || |||||||| || |||| | || || ||| | Sbjct 610892 AGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAAC-CTTGTCTGACTACAACAT 610950 Query 178103 CCAAAAAGAATCAAC 178117 |||||| ||||| || Sbjct 610951 CCAAAAGGAATCCAC 610965 Score = 107 bits (118), Expect = 5e-18 Identities = 129/173 (75%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAA 178005 |||||||||| ||||| | || ||||| || ||||| || || || || || | Sbjct 610338 CAGGAAAAACCATCACTTTGGACGTGGAGTCATCCGACACAATTGAAAATGTGAAGGCTA 610397 Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 | |||||||||||||| |||||||| || ||||| || ||||||| || || || || | Sbjct 610398 AAATTCAGGACAAAGAGGGAATCCCACCTGACCAACAGAGACTTATTTTTGCTGGCAAGC 610457 Query 178066 AGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAAC 178117 | | || |||||||| || |||| | || || ||| ||||||| ||||| || Sbjct 610458 AATTAGAGGATGGAAGAAC-CTTGTCTGACTACAACATCCAAAAGGAATCCAC 610509 >seq62 Length=53519 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| ||||| | || |||||||| |||||||| || ||||| Sbjct 26489 AAAATGC---AGATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAG 26433 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || ||| || || ||| ||| |||| || ||||||||||| || Sbjct 26432 GCATCCGAAACGATTAGGAATGTTAAGTCAAAAATTGAGGATAAGGAAGGAATCCCACCT 26373 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| | || || | | ||||| ||| | || |||| ||| | | || || Sbjct 26372 GACCAGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGAC 26313 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || || || || |||| |||| Sbjct 26312 TACAACATCCAGAAGGAGTCCACCTTGCA-CTTG 26280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728763196652