Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq5 125 5e-24 >seq5 Length=1520521 Score = 125 bits (138), Expect = 5e-24 Identities = 317/472 (67%), Gaps = 14/472 (3%) Strand=Plus/Minus Query 101637 TAAGTGTTGGAAACGGTCTAGGAGTTCGCGTCAA-CTGCATTTTAAGAGCA-TCAATGTG 101694 |||| ||||| ||||| |||| | || || | ||||| ||| | ||| || ||||| Sbjct 1132343 TAAGCGTTGGGAACGGG-TAGGGGATCCTGTTTAGCTGCACTTTTA-AGCTGTCTATGTG 1132286 Query 101695 ATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGT 101754 | |||| |||||||| || | | | || || |||| | ||||| || ||| Sbjct 1132285 GTTGTTGTAGACGTGAGCATTGCCCAAAATGTGTATGAACTGTGCAGGCTGTAAATTGCA 1132226 Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 || || ||||||||| || || | |||||| ||||||||| || || || || | Sbjct 1132225 CACCTGGGCAATCATGTGTGTGAATATGGAATAGGAAGCAATGTTGAAGGGGACCCCAAG 1132166 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||| ||| || |||||||||| ||||| || || ||||| | || ||||| Sbjct 1132165 ACCCAAGTCACAAGACCTTTGATACATAATGCAGGATAGTTTCCCATCGAAAACGTAAAA 1132106 Query 101875 TTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGC 101934 ||||| ||| | ||||||||| || || |||| | | | || |||||||| || Sbjct 1132105 TTGACATAAGATATGACAAGGAGGTAATGCCATCTGATCCAAATCCTTTACATTCCATGC 1132046 Query 101935 ACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAA 101994 ||| | | || || ||| ||| || | ||||||| || || | | |||||| Sbjct 1132045 ACAAAGGATAATTCTCCTACTTGTTGGTTCATTTTTTATTAAATGGATAACATTTTTTAA 1131986 Query 101995 TTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTT--TATATTCTGCTCCGAAA 102052 |||||| || |||| ||| |||| | | || || | ||||| || || || Sbjct 1131985 TTGGTCTACACCTTTATCTTCGTAAT--TGTCATGCATGTTTGTGTATTCAGCACCAAAG 1131928 Query 102053 TGCCTCCACTGAAATCCATACACAGGT-CCAAGATCTCCTTCA--TCTCTGT 102101 || |||||||| || ||||| | ||| ||||| || |||| ||||||| Sbjct 1131927 TGTCTCCACTGGAAACCATAAATGGGTCCCAAG---TCATTCACTTCTCTGT 1131879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361251138361514