Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq13 122 1e-22 >seq13 Length=1997354 Score = 122 bits (134), Expect = 1e-22 Identities = 361/549 (66%), Gaps = 6/549 (1%) Strand=Plus/Minus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| ||||| || |||| |||||||| ||||| || |||||||| ||| | Sbjct 1648197 GTGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTT 1648138 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTG 24267 |||| |||| |||||| || | | || || |||| ||| | || || || || Sbjct 1648137 CTGCTTCTTAAACCAAAAAATAG-CACAGAAACTTCCACTAAATAGGATACCCTCCACAC 1648079 Query 24268 CCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCC 24327 ||| ||| | | |||||| || | | | | || | ||||||||| |||| Sbjct 1648078 AGGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTTTATCCACTTGGCTGCCC 1648019 Query 24328 AATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttttt 24387 | || || || || || || || | || || || | ||| || | || ||| Sbjct 1648018 ACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCTTT 1647959 Query 24388 CATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTT 24447 | || || || | || | || || || | |||||| | || || || || |||| Sbjct 1647958 CCTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATTTT 1647899 Query 24448 CAATGGCCATTTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGTACTTCTA-TACA 24505 ||| || || || || ||| ||| ||| ||||| ||||| || |||| || | Sbjct 1647898 CAACAGCAATCTGGAAGGAGTA-AAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAAA 1647840 Query 24506 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 24565 || | | | |||||||||||| ||| ||||| ||||| ||||| || || ||||| || Sbjct 1647839 AATTTGCT-TGCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACAC 1647781 Query 24566 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 24625 ||||||||| |||| |||||| | | ||| ||| | |||| || | ||| |||| Sbjct 1647780 ATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTAGA 1647721 Query 24626 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 | || | |||||| ||||||| || || || || || ||||| || | || ||| | Sbjct 1647720 CAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCACAC 1647661 Query 24686 GTCATGATA 24694 ||| |||| Sbjct 1647660 GTCTGGATA 1647652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721496098720