Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4 105 7e-18 seq11 82.4 8e-11 >seq4 Length=1862670 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || ||||| || || ||||| | ||||| || | || Sbjct 692513 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 692572 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||| | | |||| ||||||| ||||||||||| ||||| | ||||| Sbjct 692573 GACACGATTGAAAATG-TGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCA 692631 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||||||| | || |||||||| |||| || | | ||| | |||||||| Sbjct 692632 ACAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAA 692691 Query 40869 CATCCAGAAGGA 40880 |||||| ||||| Sbjct 692692 CATCCAAAAGGA 692703 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || ||||| || || ||||| | || || || | | Sbjct 692741 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 692800 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||||||| ||||||||||| |||||| | || ||| Sbjct 692801 GACACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAG 692860 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| ||||||| | || |||||||| | || || | | ||| | ||||||||| Sbjct 692861 CAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAAC 692920 Query 40870 ATCCAGAAGGAGGCCACG 40887 ||||| ||||| ||||| Sbjct 692921 ATCCAAAAGGAATCCACG 692938 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || ||||| || |||||||| | ||||| || | || Sbjct 692969 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 693028 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||| | | || | ||||||| ||||||||||| ||||| | ||||| Sbjct 693029 GACACGATTGAAAATG-TAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTGACCA 693087 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||| || | || |||||||| |||| || | | ||| | ||||| || Sbjct 693088 ACAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTATAA 693147 Query 40869 CATCCAGAAGGAGGCCAC 40886 |||||| ||||| |||| Sbjct 693148 CATCCAAAAGGAATCCAC 693165 >seq11 Length=2627280 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| |||||||||||||| | || || |||||||||||| | || || || || Sbjct 280242 AAAATGCAGATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCA 280301 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||| | | | || | | ||| ||||||| || || || || ||||| | || Sbjct 280302 TCCGAAACGATTAGGAATG-TTAAGTCAAAAATTGAGGATAAGGAAGGAATCCCACCTGA 280360 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || || || | || || ||| |||| || | | | ||||| Sbjct 280361 CCAGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGACTA 280420 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||| |||| |||| Sbjct 280421 CAACATCCAGAAGGAGTCCACCTTGCA 280447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219109836640