Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq11 86.0 7e-12 seq4 86.0 7e-12 >seq11 Length=2627280 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| ||||| ||| |||||| || || ||||| ||||||| | || | || || Sbjct 280453 ACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCC 280394 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||| || | |||| || | ||||||||| | || | | ||||| ||| Sbjct 280393 AACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCCTCA 280334 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 |||||| || | || | ||| ||| | |||||||| | ||||||||||| Sbjct 280333 ATTTTTGACTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTT 280274 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || |||| || ||||| || || |||||||| Sbjct 280273 CCGGTTAATGTTTTTACGAATATCTGCATTTT 280242 >seq4 Length=1862670 Score = 86.0 bits (94), Expect = 7e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| |||||| |||||||| || || ||| |||||||| || ||||| |||| | Sbjct 692511 CCACCTCGTAAACGTAACACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 692452 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || | | || |||| ||||| ||||| || || |||| ||| ||||| | || Sbjct 692451 AAGGTTCTTCCATCCTCTAATTGCTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGG 692392 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| |||||| ||| |||| | || | | | | |||||| || ||||| Sbjct 692391 ATTCCCTCTTTGTCC-TGAATTTTAGCCTTCACATTTTCAATTGTGTCGGATGACTCCAC 692333 Query 43136 ATCGACCGTGATGGTTTTGCC 43156 || | ||||||||||| || Sbjct 692332 GTCCAAAGTGATGGTTTTTCC 692312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817499931920