Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-23 >seq5 Length=1520521 Score = 123 bits (136), Expect = 2e-23 Identities = 207/297 (70%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 20221 GATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATG 20280 || ||||| || | ||||| || || |||||||| ||||| |||||||| ||||| Sbjct 1131893 GACTTGGGACCCATTTATGGTTTCCAGTGGAGACACTTTGGTGCTGAATACACAAACATG 1131952 Query 20281 AACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAA 20340 | ||||| | |||| ||||| |||||| |||||||||| ||||||| ||| Sbjct 1131953 CATGACAATTACGAAGATAAAGGTGTAGACCAATTAAAAAATGTTATCCATTTAATAAAA 1132012 Query 20341 AC-GAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTT 20399 | ||||| | | | || |||||||| | || || ||||| | || ||| || | Sbjct 1132013 AATGAACCAACAAGT-AGGAGAATTATCCTTTGTGCATGGAATGTAAAGGATTTGGATCA 1132071 Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTC 20459 ||||| || ||||| |||||||| |||| |||||||||||| || || | || Sbjct 1132072 GATGGCATTACCTCCTTGTCATATCTTATGTCAATTTTACGTTTTCGATGGGAAACTATC 1132131 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 || ||||||||| | || ||| |||| || || || || ||||| ||||| Sbjct 1132132 CTGCATTATGTATCAAAGGTCTTGTGACTTGGGTCTTGGGGTCCCCTTCAACATTGC 1132188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399183931889230