Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 4e-13 >seq4 Length=1862670 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| |||| ||| | || ||||| ||||| ||||||||||| | || ||| | | || Sbjct 692953 TAAG-ACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCAT 692895 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 | || ||||||||||| ||| | || |||||||| ||||| ||| | || || || | Sbjct 692894 CCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTTGT 692835 Query 18232 CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 | ||||| ||| || | | ||| |||||| | ||| || | ||||| Sbjct 692834 CCTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGATAG 692775 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || || | ||||| || ||||||||||| Sbjct 692774 TCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 692741 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||| | ||| ||||| ||||| ||||||||||| | || ||| | | |||| Sbjct 692724 AGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCT 692665 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 |||||||||||||| ||| | || ||||| ||||| || Sbjct 692664 TCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTC 692627 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||| | || ||||| ||||| ||||| ||||| | || ||| | | |||| Sbjct 693180 AGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTTCCATCT 693121 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||||||||| ||| | |||||||| ||||| || || | || || || || Sbjct 693120 TCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCC 693061 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | | ||| ||||| | ||| || | |||||| | Sbjct 693060 TGAATTT-TCGCTTTTACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATGGT 693002 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | || || || ||||||||||| Sbjct 693001 CTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 692969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343935274430