Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4 255 5e-63 >seq4 Length=1862670 Score = 255 bits (282), Expect = 5e-63 Identities = 980/1518 (65%), Gaps = 41/1518 (3%) Strand=Plus/Minus Query 37118 TCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTA-TATATA 37176 |||| |||||||| || || || || |||||| | || || || ||| || || Sbjct 758053 TCAACAGGTGTGGGTTCACTACGAAGAACTCTCCACTCAGAACCCTCCT-GTAGTAAATG 757995 Query 37177 TTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTA 37236 || || || || ||||||| ||||| || || | | ||||| || || || |||||| Sbjct 757994 TTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGAAGCAGTA 757935 Query 37237 GGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGT 37296 ||||| ||||| | || || |||||| || || || | || || || || | | Sbjct 757934 GGCATAGGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGCCTTCAAT 757875 Query 37297 TCATTCCAATCCCATAAATCTGTTGGGTTCTTTAA----CCACATATCATATTGTAGAAT 37352 | || ||||||||| | || ||||| | || | |||||| || | || ||||| Sbjct 757874 TTATCCCAATCCCA-ATATTTGTTGTCCACCTTGACATTCCACATGTCGAACTGAAGAAT 757816 Query 37353 ACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTC 37412 |||| || |||||| | | | || ||||||||||||||||| | || || | ||| Sbjct 757815 TCCTTGGCTAGCTGGACTACCCTGGTAGGTCTCATAAGGTCCGTACACTTGTGCCAATTC 757756 Query 37413 GCAACTAGAT-TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTT 37471 || | || || | || |||||||| ||||||||||||||| | |||||||| | Sbjct 757755 -CATGGACATCTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTATTTAATTCCT 757697 Query 37472 TTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAA 37531 | || ||| || ||| || | | | || || || ||||| || || | Sbjct 757696 TCGCAGAATCGGATTCATATGGGTATCTAAGAAGCATGAAGGTGTCTGCCAAGCCTTGTA 757637 Query 37532 CACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAAT 37591 | || || ||||||||||| ||| |||| || |||| | || ||| || || | Sbjct 757636 CTCCTATCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCCTCCTGCACAGGGTAGT 757577 Query 37592 AATTGATATCTATTATTTTATTTAGATT---TTTAACTAGTATTTTCGTAATTATTCTCA 37648 |||| | ||||| |||| | | || | ||| || ||||| |||||| || Sbjct 757576 AATTCCTCTCTATAATTTGGTCCAAGTTACGTGTAA-TA--ATTTTGGTAATTTCGTACA 757520 Query 37649 ACTTGTCGAACATAAAT--ACGTTATT----ATTAACAAATTTACTCAACGAAATAGATC 37702 || | || | ||| | || || | |||||||| | ||||| || || Sbjct 757519 GTTTCTTAAAATTGAATTCTCCTTTTTCCACGTCGACAAATTTGCACAACGCGATGGAGG 757460 Query 37703 CTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGAT 37762 | | ||||||||| || ||||| ||| | | || | | |||||||| |||||| | Sbjct 757459 CCAAATTACATACGGCCACTTCGTCTGGGGAAGTATACTCAATAATCTCACAACAGAGGT 757400 Query 37763 TACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTAT 37822 |||| || | || || ||||| || |||| ||||| || |||||||||||||||| Sbjct 757399 TACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTACAAGAATCTTTAT 757340 Query 37823 ATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTC 37882 | | || || || || |||||| ||| | | ||| | ||||| | || Sbjct 757339 ACAACATGTAGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCAAACCATAGA--TC 757282 Query 37883 TTGCTTTAACGATCGCTTTAAttt---ttttCTTTGTT--TCGTATTCTATATATAATTT 37937 |||| | || | ||| ||| | | || || || |||| || |||| || Sbjct 757281 TTGC-GCCAGGACAGTTTT--TTTGCCCATACCTTCTTCCTCATATTTTAAGTATAGCTT 757225 Query 37938 GTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGA 37997 | || || | ||||| || | ||| ||||||||||| || ||||| | || Sbjct 757224 TTCGAATTCCTCACCCCAAGACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAGT 757165 Query 37998 CCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAA 38057 ||| | | || || || ||| | | ||| || | ||||| ||||||| ||| || Sbjct 757164 CCAATTCTGATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATACAGCATAGAA 757105 Query 38058 TAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAA 38117 | ||| | | ||| ||| || ||||| ||| || | | | |||||| ||||| Sbjct 757104 AAGGTCTCTAGCTCTTAGTTCCTCTTTCCCGTGATTTTTACGAAGGTCTAGAAATTCGAA 757045 Query 38118 TATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCC 38177 ||||| | |||||||||||| || || | | | | ||| ||| || | || || Sbjct 757044 AATATCTGAGTGCCATGGTTCGATGTACACTGCAAAGGATCCCTTTCTCTTTCCGCCACC 756985 Query 38178 CTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGA 38237 || | | ||||||| |||| | ||| | | || | ||| || |||| || || || Sbjct 756984 TTGGTCTACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTAACCCGTTGGA 756925 Query 38238 TTTGCCGTTTATAC--CGGATATATAAGTACCCTTAG--CTCGTATATTACTTATCGACA 38293 | | ||||| | | | || || ||| || | ||| |||| || || | Sbjct 756924 TATTCCGTTGGTTCCTCTAATGTAGGAGT----TTTGTCCTCTAATATCCTGTACCGCTA 756869 Query 38294 ATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAAATATA 38352 ||| |||||||| || |||||| | || | ||||| ||||| | ||| || || ||| Sbjct 756868 CTCCAATTCCACCAGC-CGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTCGAAAATA 756810 Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGA 38412 ||||| || ||| | || || || | ||||| |||||||| || || Sbjct 756809 CCTTCAATCGAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTTGCGGTCTGGGC 756750 Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || | || || || ||||| | ||| ||| | || |||||| |||| | || | Sbjct 756749 GTCCCAGAATTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTTGAGACATAAGATGA 756690 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 || || |||| | | || | ||| || ||| || || | ||||| ||||| ||| Sbjct 756689 TACGTCTCTAGCGCTTTTTCCAGATCCCCAATGTGGATGCCAATGGATACTCTCATCAGC 756630 Query 38533 ATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAAT 38592 | ||||||||||||||| || || || ||| | ||| || || || |||| || Sbjct 756629 AGATGTTGTGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGGTAGGACCTTTCCAAA 756570 Query 38593 GTTTTTATTCCAAAATAA 38610 || || | ||||| ||| Sbjct 756569 GTCTTGAACCCAAAGTAA 756552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524718008160