Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 237 2e-57 seq13 152 7e-32 >seq4 Length=1862670 Score = 237 bits (262), Expect = 2e-57 Identities = 1008/1567 (64%), Gaps = 39/1567 (2%) Strand=Plus/Minus Query 79045 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 79104 || || || || ||||| || |||||| || || |||| |||||| ||||| Sbjct 758048 AGGTGTGGGTTCACTACGAAGAACTCTCCACTCAGAACCCTCCTGTAGTAAATGTTACTC 757989 Query 79105 GTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATA 79164 || || ||||| | || || || || || | |||||| | || || || || |||||| Sbjct 757988 GTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTCGAAGCAGTAGGCATA 757929 Query 79165 GGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCC 79224 ||||||| || | |||||| | |||| | || || | || | ||| Sbjct 757928 GGTGCCAGCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATTCGCCTTCAATTTATCC 757869 Query 79225 CAATCCCAAAGATCAGACGGG-ACA---ACATTCCAAAGATCATATTGTAGAATACCGTT 79280 ||||||||| || | | || |||||||| | || | || ||||| || | Sbjct 757868 CAATCCCAAT-ATTTGTTGTCCACCTTGACATTCCACATGTCGAACTGAAGAATTCCTTG 757810 Query 79281 ACTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAAC 79339 ||||| | | | |||| ||| || ||||||||||| | | || || ||||| Sbjct 757809 GCTAGCTGGACTACCCTG-GTAGGTCTCATAAGGTCCGTACACTTGTGCCAATTCCATGG 757751 Query 79340 TCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGC-T 79398 | ||| || || | ||||| || ||||||||||| | ||||| | || | || Sbjct 757750 ACATCTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTATTTAATTCCTTCGCAG 757691 Query 79399 TCTAGGCTATCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACC 79457 | || | ||| |||| | || |||| || || || | |||||| || ||||| || || Sbjct 757690 AATCGGAT-TCATATGGGT-ATCTAAGAAGCATGAAGGTGTCTGCCAAGCCTTGTACTCC 757633 Query 79458 AATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATT 79517 || || || ||||| |||||||| || || |||||| || | | ||| || ||||| Sbjct 757632 TATCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCCTCCTGCACAGGGTAGTAATT 757573 Query 79518 AATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAG 79577 | |||||||||| | | || | || | |||| | || | ||||| Sbjct 757572 CCTCTCTATAATTTGGTCCAAGTTACGTGTAATAATTTTGGTAATTTCGTACAGTTTCTT 757513 Query 79578 AAAATCAAATCGTCCAT------CTATTACAAACATGTTCAACGCGACAGATGCCAGATT 79631 ||||| ||| ||| | | ||||| || |||||||| || |||| ||| Sbjct 757512 AAAATTGAATTCTCCTTTTTCCACGTCGACAAATTTGCACAACGCGATGGAGGCCAAATT 757453 Query 79632 ACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACA 79691 ||| ||||| || || | | | ||| | || || ||| |||||||||||||| Sbjct 757452 ACATACGGCCACTTCGTCTGGGGAAGTATACTCAATAATCTCACAACAGAGGTTACTACA 757393 Query 79692 CTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 79751 || || || || || || | ||| || ||| |||||| | ||| ||||| | || Sbjct 757392 TTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTACAAGAATCTTTATACAACAT 757333 Query 79752 GAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTT 79811 | | ||| ||| ||||| |||||| || | ||| || ||| | || | ||| Sbjct 757332 GTAGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCAAACCATAGATCTTGCGCC-- 757275 Query 79812 TATTATAGACTTGTATCTCTT---TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTC 79868 | | || || | | | | |||| || |||| | |||| |||||| || Sbjct 757274 -AGGACAGTTTTTTTGCCCATACCTTCTTCCTCATATTTTAAGTATAGCTTTTCGAATTC 757216 Query 79869 GTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCC 79928 || |||||| || ||| || |||||||| | || |||||||| | ||| | Sbjct 757215 CTCACCCCAAGACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTCTG 757156 Query 79929 ATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTC 79987 || || ||||||| ||||| || || ||||| | ||| | ||| ||| || || |||| Sbjct 757155 ATTTTCTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATACAGC-ATAGAAAAGGTCTC 757097 Query 79988 TGGTTCTATGCTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACGCCATAATATCA 80046 | | ||| | ||||| ||||| || ||| || ||| || || || | | |||||| Sbjct 757096 TAGCTCTTAGTTCCTC-TTTCCCGTGATTTTTACGAAGGTCTAGAAATTCGAAAATATCT 757038 Query 80047 GAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCT 80106 || ||||| ||||| | ||| | || | |||| || || || || || ||| Sbjct 757037 GAGTGCCATGGTTCGATGTACACTGCAAAGGATCCCTTTCTCTTTCCGCCACCTTGGTCT 756978 Query 80107 ATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCA 80166 | |||||||| || | ||| | || |||| |||||| | | || |||||| | || Sbjct 756977 ACATATCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTAACCCGTTGGATATTCCG 756918 Query 80167 TTGGTCCCGGAGATATAG--CTTCCACTG-GCACGAATATTACTAATTGATAGACCTATT 80223 ||||| || || ||| || || | | ||||| | | || || ||| Sbjct 756917 TTGGTTCCTCTAATGTAGGAGTT---TTGTCCTCTAATATCCTGTACCGCTACTCCAATT 756861 Query 80224 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATG 80283 || || ||| |||| || | ||||| |||| | ||| || | || || || || Sbjct 756860 CCACCAGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTCGAAAATACCTTCAATC 756801 Query 80284 CTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 80343 |||| | |||| || || |||||| |||||||| | | || || | | Sbjct 756800 GAATCAGCTTTCATACAGAGAAGGAAACAGGACGACATTTGCGGTCTGGGCGTCCCAGAA 756741 Query 80344 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 80403 || || || ||||| | ||||| ||||| |||||| ||||| |||| |||||||| Sbjct 756740 TTGAACAACGTAGGTGTTGCGTGTGTAAAATATTTTTGAGACATAAGATGATACGTCTCT 756681 Query 80404 ATAGCTGATTCTATAT-CCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTG 80462 | ||| ||| | || |||| || || || || | | || | ||| | || || || Sbjct 756680 AGCGCTTTTTCCAGATCCCCAATG-TGGATGCCAATGGATACTCTCATCAGCAGATGTTG 756622 Query 80463 AGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAA 80522 |||||||| | ||||| ||||||| | | ||| || |||||||||| || || Sbjct 756621 TGGTCTTTCGATAATCTTTCCATTTATTCGAAGGAGGTAGGACCTTTCCAAAGTCTTGAA 756562 Query 80523 ACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCC 80580 ||||| || | ||| | ||| ||||| ||| ||| || ||| ||| ||||| Sbjct 756561 CCCAAAGTAATCGTAATTAAAATCCCTCGT--GTAGTCAATTTCCTTGTTTAGTCTATCC 756504 Query 80581 TTATATT 80587 |||| || Sbjct 756503 TTATGTT 756497 >seq13 Length=1997354 Score = 152 bits (168), Expect = 7e-32 Identities = 368/549 (67%), Gaps = 6/549 (1%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||||||| || |||| ||||||||| ||||| || |||||||| ||| | Sbjct 1648197 GTGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTT 1648138 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTG 50092 |||| |||| |||||| || | | || || ||| ||| | ||| || || || Sbjct 1648137 CTGCTTCTTAAACCAAAAAATAG-CACAGAAACTTCCACTAAATAGGATACCCTCCACAC 1648079 Query 50093 CGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCC 50152 |||| ||| || | || ||| || | | | | || | ||||||||| |||| Sbjct 1648078 AGGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTTTATCCACTTGGCTGCCC 1648019 Query 50153 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttttt 50212 | || || || || || || || |||| || || | ||| || | || ||| Sbjct 1648018 ACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCTTT 1647959 Query 50213 CATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTT 50272 | || || || | || | || || || | |||||| | || || || || |||| Sbjct 1647958 CCTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATTTT 1647899 Query 50273 CAATGGCCATCTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGCACTTCT-GTACA 50330 ||| || ||||| || ||| ||| ||| ||||| ||||| ||||||| ||| | Sbjct 1647898 CAACAGCAATCTGGAAGGAGTA-AAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAAA 1647840 Query 50331 AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 50390 || | | | ||||||||||| ||| ||||| ||||| ||||| || || ||||| || Sbjct 1647839 AATTTGCTT-GCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACAC 1647781 Query 50391 ATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 50450 ||||||||| ||||||||||| || ||| ||| | |||| || | ||| |||| Sbjct 1647780 ATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTAGA 1647721 Query 50451 TATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 50510 | || | |||||| ||||||| || || || || || ||||| || | || ||| | Sbjct 1647720 CAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCACAC 1647661 Query 50511 GTCATGATA 50519 ||| |||| Sbjct 1647660 GTCTGGATA 1647652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268674302960