Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 206 4e-48 seq13 136 5e-27 >seq4 Length=1862670 Score = 206 bits (228), Expect = 4e-48 Identities = 815/1262 (65%), Gaps = 30/1262 (2%) Strand=Plus/Minus Query 71427 CTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT---TC 71483 ||| || || ||||||| || ||||||||||| | ||||| | || | || || Sbjct 757746 CTCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTTTATTTAATTCCTTCGCAGAATC 757687 Query 71484 CGGGCTATCAAATGGATAATTTAAGA-GAATAAACGCGTCTGCTAATCCTTGAACGCCAA 71542 || | ||| |||| || | ||||| | || || | |||||| || ||||| || || | Sbjct 757686 --GGAT-TCATATGGGTA-TCTAAGAAGCATGAAGGTGTCTGCCAAGCCTTGTACTCCTA 757631 Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 | || || |||||||||||||| || || |||||| || | | ||| || ||||| Sbjct 757630 TCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCCTCCTGCACAGGGTAGTAATTCC 757571 Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 71662 | |||||||||| | | || | || | |||| | || | ||||| || Sbjct 757570 TCTCTATAATTTGGTCCAAGTTACGTGTAATAATTTTGGTAATTTCGTACAGTTTCTTAA 757511 Query 71663 AATCAAAT-CTCCCATCTATT-----ACAAACACGTTCAAGGCAACAGATGCCAGATTAC 71716 ||| ||| |||| | | ||||| | ||| || | || |||| ||||| Sbjct 757510 AATTGAATTCTCCTTTTTCCACGTCGACAAATTTGCACAACGCGATGGAGGCCAAATTAC 757451 Query 71717 AAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACT 71776 | ||||| || || | | | ||| | ||||| ||| || || |||||||| | Sbjct 757450 ATACGGCCACTTCGTCTGGGGAAGTATACTCAATAATCTCACAACAGAGGTTACTACATT 757391 Query 71777 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAA 71836 | || || || || || | ||| || ||| |||||| | ||| ||||| | || Sbjct 757390 TTATCGTCCCCAAGTTCTTTTGGTTGGACTTCGCGTTACAAGAATCTTTATACAACATGT 757331 Query 71837 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 71896 | ||| ||| ||||| |||||| || | ||| || ||| | || | ||| | Sbjct 757330 AGGGAACACCCGTTTCTATCTGACTTTGCAAAATGGCAAACCATAGATCTTGCGCCAGGA 757271 Query 71897 TTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTC 71956 | || ||| | |||| || |||| | |||| |||||| || || | Sbjct 757270 CAGTTTTTTTGCCCATACCTTCTTCCTCATATTTTAAGTATAGCTTTTCGAATTCCTCAC 757211 Query 71957 CCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCAT 72016 |||||| | ||| || |||||||||||||| |||||||| | ||| | || | Sbjct 757210 CCCAAGACTCACTTAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTCTGATTTT 757151 Query 72017 CATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTT 72075 | ||||||| ||||| || || ||||| | ||| | ||| ||| || || ||||| | | Sbjct 757150 CTTTTACTCTCTTCATGAAAAGGTCAGGGACCCATACAGC-ATAGAAAAGGTCTCTAGCT 757092 Query 72076 CTATGCTCCTCGTTTCCTGT-ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134 || | ||||| ||||| || ||| || ||| || || || | | |||||| || || Sbjct 757091 CTTAGTTCCTC-TTTCCCGTGATTTTTACGAAGGTCTAGAAATTCGAAAATATCTGAGTG 757033 Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194 ||| ||||| | ||| | || | |||| | || || || || |||| || Sbjct 757032 CCATGGTTCGATGTACACTGCAAAGGATCCCTTTCTCTTTCCGCCACCTTGGTCTACATA 756973 Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 72254 |||||| || | ||| | || |||| |||||| | | || |||||| || ||||| Sbjct 756972 TCTAGCTGTATCATTGAACACCCTCAGCATTGGCACTAACCCGTTGGATATTCCGTTGGT 756913 Query 72255 CCCGGAGATATAG--CTTCCACTG-GCACGAATATTGCTAATTGATAGACCTATTCCCCC 72311 || || ||| || || | | ||||| | | || || ||||| || Sbjct 756912 TCCTCTAATGTAGGAGTT---TTGTCCTCTAATATCCTGTACCGCTACTCCAATTCCACC 756856 Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 72371 ||| |||| || | ||||| |||| | ||| || | || || || || ||| Sbjct 756855 AGCCGTTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTCGAAAATACCTTCAATCGAATC 756796 Query 72372 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 72431 | | |||| || || |||||| |||||||| | | || || | ||| || Sbjct 756795 AGCTTTCATACAGAGAAGGAAACAGGACGACATTTGCGGTCTGGGCGTCCCAGAATTGAA 756736 Query 72432 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGC 72491 || ||||| | ||||| ||||| |||||| ||||| |||| |||||||| | || Sbjct 756735 CAACGTAGGTGTTGCGTGTGTAAAATATTTTTGAGACATAAGATGATACGTCTCTAGCGC 756676 Query 72492 TGATTCTATAT-CCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTC 72550 | ||| | || |||| || || || || | | || | ||| | || ||| || |||| Sbjct 756675 TTTTTCCAGATCCCCAATG-TGGATGCCAATGGATACTCTCATCAGCAGATGTTGTGGTC 756617 Query 72551 TTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 72610 |||| | ||||| ||||||| | | |||||| |||||||||| || || |||| Sbjct 756616 TTTCGATAATCTTTCCATTTATTCGAAGGAGGTAGGACCTTTCCAAAGTCTTGAACCCAA 756557 Query 72611 AATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATA 72668 | || | ||| | ||| ||||| ||| ||| || || ||| ||||||||| Sbjct 756556 AGTAATCGTAATTAAAATCCCTCGT--GTAGTCAATTTCCTTGTTTAGTCTATCCTTATG 756499 Query 72669 TT 72670 || Sbjct 756498 TT 756497 >seq13 Length=1997354 Score = 136 bits (150), Expect = 5e-27 Identities = 357/537 (66%), Gaps = 6/537 (1%) Strand=Plus/Minus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||||||||| ||||||| |||||||| ||||| || |||||||| ||| | Sbjct 1648197 GTGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTT 1648138 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTG 42197 |||| |||| |||||| |||| | || || |||| ||| | ||| || || || Sbjct 1648137 CTGCTTCTTAAACCAAAAAATAG-CACAGAAACTTCCACTAAATAGGATACCCTCCACAC 1648079 Query 42198 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCC 42257 ||| ||| | | || ||| || | | | || | ||||||||| |||| Sbjct 1648078 AGGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTTTATCCACTTGGCTGCCC 1648019 Query 42258 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttttt 42317 | || || || || || || || |||| || || | ||| || | || ||| Sbjct 1648018 ACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCTTT 1647959 Query 42318 CATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTT 42377 | || || || | || | || || || | |||||| | ||||| || || |||| Sbjct 1647958 CCTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATTTT 1647899 Query 42378 CAATGGCCATCTGAAATCCGTAGAAACATCTG-GCCTCGGTAACCTGTACTTCT-GTACA 42435 ||| || ||||| || ||| ||| ||| ||||| |||| || |||| ||| | Sbjct 1647898 CAACAGCAATCTGGAAGGAGTA-AAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAAA 1647840 Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495 || | | | ||||||||||| ||| ||||| ||||| ||||| || || ||||| || Sbjct 1647839 AATTTGCTT-GCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACAC 1647781 Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGA 42555 ||||||||| |||| |||||| | ||||||| | |||| || | ||| |||| Sbjct 1647780 ATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTAGA 1647721 Query 42556 TATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCA 42612 | || | |||||| | ||||| || || ||||| || ||||| || | || ||| Sbjct 1647720 CAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCA 1647664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139082550640