Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq8 111 2e-19 >seq8 Length=2003671 Score = 111 bits (122), Expect = 2e-19 Identities = 230/341 (67%), Gaps = 15/341 (4%) Strand=Plus/Minus Query 164605 AAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTT 164664 |||||| |||||||||| ||| |||| || ||||||||||| |||| || | ||| || Sbjct 186194 AAAATTATTAATGGTCCCGAAATATTAAATAAATATGTAGGACAGTCTGAGGAAAATATT 186135 Query 164665 AGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTA 164724 || || | ||| |||| || ||| ||| | ||| | ||| | | || || Sbjct 186134 AGGAACCTATTTAAGGATGCAGAATTGGAATATAAGCAGAGTGGTGAAAATTCACAACTA 186075 Query 164725 CATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAA---AAACGTGGTGATAAT--- 164778 || |||| |||| |||||||| |||||| |||| | | | || ||| | | Sbjct 186074 CACATTATCATTTTAGATGAGATTGATGCTATTTGTCGACGGAGAGGTAGTGCTGCTTCG 186015 Query 164779 ATTATTCATGATG-------CAGTG--GTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829 | | | || || |||| || |||||| | || || ||||||||||| ||| Sbjct 186014 AGTGGTACTGGTGTAAACGACAGTATAGTGAATCAGCTACTCTCCAAAATAGATGGGGTA 185955 Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889 | || ||||||||| | | | || ||||||||| || ||||||||| |||||| Sbjct 185954 AACAGTTTGAATAATATTCTGCTGATCGGGATGACCAACAGAATTGATTTAATAGATGAT 185895 Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAAT 164930 ||| | || |||| || | || ||| || | |||||||| Sbjct 185894 GCTCTGTTGAGACCAGGGAGGTTTGAACTGCACATAGAAAT 185854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871895722400