Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq13 134 2e-26 >seq13 Length=1997354 Score = 134 bits (148), Expect = 2e-26 Identities = 349/527 (66%), Gaps = 4/527 (1%) Strand=Plus/Minus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||||||||| || |||| ||||||||| ||||| || |||||||| ||| | Sbjct 1648197 GTGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACTTGTT 1648138 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||| |||| |||||| || | | ||| |||| ||| | ||| || || || Sbjct 1648137 CTGCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATACCCTCCACACA 1648078 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCA 33497 ||| ||| | | || ||| || | | | | || | ||||||||| ||||| Sbjct 1648077 GGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTATCGTTTATCCACTTGGCTGCCCA 1648018 Query 33498 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 33557 || || || || || || || |||| || || | ||| || | || |||| Sbjct 1648017 CAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCTTTC 1647958 Query 33558 ATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTC 33617 || || || | || | || || || | |||||| | || || || || ||||| Sbjct 1647957 CTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATTTTC 1647898 Query 33618 AATGGCCATCTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGTACTTCT-GTACAA 33675 || || ||||| || ||| ||| ||| ||||| ||||| || |||| ||| || Sbjct 1647897 AACAGCAATCTGGAAGGAGTA-AAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAAAA 1647839 Query 33676 AATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33735 | | | | || |||||||| ||| ||||| ||||| ||||| || || ||||| ||| Sbjct 1647838 ATTTGCTT-GCTAAATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAACACA 1647780 Query 33736 TGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGAT 33795 |||||||| |||| |||||| | | ||| ||| | |||| || | ||| |||| Sbjct 1647779 TGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCTAGAC 1647720 Query 33796 ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 | || | |||||| ||||||| || || || || || ||||| || Sbjct 1647719 AAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTA 1647673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947090984240