Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 244 3e-59 seq5 100 7e-16 >seq4 Length=1862670 Score = 244 bits (270), Expect = 3e-59 Identities = 608/913 (67%), Gaps = 14/913 (2%) Strand=Plus/Plus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459 ||||| |||| | |||||||| ||| || ||||| | ||| | ||| | || || Sbjct 756565 AAGACTTTGGAAAGGTCCTACCTCCTTCGAATAAATGGAAAGATTATCGAAAGACCACAA 756624 Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCA--TTGCCCGGATGTTGATGCCGCGATTG 363517 ||| || | ||| | || | ||||| ||||| ||| |||| | || ||| | | Sbjct 756625 CATCTGCTGATGAGAGTATCCATTGGCATCCACATTGG--GGATCTGGAAAAAGCGCTAG 756682 Query 363518 AAACATATAAGCTTCTAAGTGCTCGTGTAT---TCACGCACGCCACGCCAACAATGTACA 363574 | || ||| | ||| | || ||| || | || ||||| || || || ||| || Sbjct 756683 AGACGTATCATCTTAT--GT-CTCAAAAATATTTTACACACGCAACACCTACGTTGTTCA 756739 Query 363575 ATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATT 363634 || |||| || | | || || ||||| || || || ||||| ||||| | |||| Sbjct 756740 ATTCTGGGACGCCCAGACCGCAAATGTCGTCCTGTTTCCTTCTCTGTATGAAAGCTGATT 756799 Query 363635 CCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCG 363694 | || || ||||| || || || || || | || || || ||| ||| | || || | Sbjct 756800 CGATTGAAGGTATTTTCGAGACGCTGAAACAGTGCGCCCTGATTAGCAAAACGGCTGGTG 756859 Query 363695 GAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCAC-AGGG 363753 ||||||| ||| || | || || || | | ||| ||| |||||| | || || | | Sbjct 756860 GAATTGGAGTAGCGGTACAGGATATTAGAGGACAAAACTCCTACATTAGAGGAACCAACG 756919 Query 363754 GGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTC 363813 | ||| || || ||| | || || ||||| | ||||| | |||| || || || || Sbjct 756920 GAATA-TCCAACGGGTTAGTGCCAATGCTGAGGGTGTTCAATGATACAGCTAGATATGTA 756978 Query 363814 GACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCC 363873 ||||| ||||| |||||| | || || | ||||| |||| |||| || || | Sbjct 756979 GACCAAGGTGGCGGAAAGAGAAAGGGATCCTTTGCAGTGTACATCGAACCATGGCACTCA 757038 Query 363874 GATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAAAAGAGGAATTGCGTGCACG 363932 |||||||| || ||||| || || || ||||| ||||||||| |||||| | | || | Sbjct 757039 GATATTTTCGAATTTCTAGACCTTCGTAAAAATCACGGGAAA-GAGGAACTAAGAGCTAG 757097 Query 363933 TGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAA 363992 || || |||||||| | ||||| |||||| ||| |||||| | || | | | | | Sbjct 757098 AGACCTTTTCTATGCTGTATGGGTCCCTGACCTTTTCATGAAGAGAGTAAAAGAAAATCA 757157 Query 363993 GAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGA 364052 ||||||| | | | ||||| | ||||||||||| | || |||||||| || Sbjct 757158 GAATTGGACTTTGATGTGCCCGAATGAATGTCCAGGGTTAAGTGAGTCTTGGGGTGAGGA 757217 Query 364053 CTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGC 364112 | | |||||| ||| ||||| || || | || || || | | || Sbjct 757218 ATTCGAAAAGCTATACTTAAAATATGAGGAAGAAGGTATGGGCAAAAAAACTGTCCTGGC 757277 Query 364113 ACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTT 364172 || | |||||||||||||| || | ||||| || || || ||||| ||||| Sbjct 757278 GCAAGATCTATGGTTTGCCATTTTGCAAAGTCAGATAGAAACGGGTGTTCCCTACATGTT 757337 Query 364173 GTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAG 364232 ||| |||||||| || ||| ||||||||||| || || | || || || | || Sbjct 757338 GTATAAAGATTCTTGTAACGCGAAGTCCAACCAAAAGAACTTGGGGACGATAAAATGTAG 757397 Query 364233 CAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCT 364292 ||||| ||| ||||||||||| || || | || ||||| ||||||||||| | Sbjct 757398 TAACCTCTGTTGTGAGATTATTGAGTATACTTCCCCAGACGAAGTGGCCGTATGTAATTT 757457 Query 364293 TGCGTCGATCGCG 364305 || || |||||| Sbjct 757458 GGCCTCCATCGCG 757470 Score = 86.0 bits (94), Expect = 2e-11 Identities = 208/313 (66%), Gaps = 8/313 (3%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || ||||| || |||| || || || |||||||||| || |||||| Sbjct 757924 GCACCTATGCCTACTGCTTCGACGTCACAAATTCTTGGCAACAACGAGTCTTTTGAACCG 757983 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || || || |||| | | ||||||| ||||| || ||||| || Sbjct 757984 TACACGAGTAACATTTACTACAGGAGGGTTCTGAGTGGAGAGTTCTTCGTAGTGAACCCA 758043 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 |||| | ||||| || | ||| || || || |||| ||| ||||||| | | || Sbjct 758044 CACCTGTTGAAGGACCTCTTCGATCGTGGTCTCTGGGATGAGGACATGAAGCAGCAGCTC 758103 Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATT 364989 || ||| || || ||| || | ||| | | |||| | || ||||| | Sbjct 758104 ATTGCCCACAACGGAAGTGTCCAATATATTAGCGAAATTCCTAACGACTTGAAGGAGCTC 758163 Query 364990 TACAAAACCGTATGGGAAATTTCCATGC----GAACTCTCATTGATATGGCGGCCGATCG 365045 || |||||||| ||||| || || || |||| ||||||||||||||||||| || Sbjct 758164 TATAAAACCGTTTGGGAGAT---CAAGCAGAAGAACA-TCATTGATATGGCGGCCGACCG 758219 Query 365046 CGGTGCTTTTATC 365058 || || || ||| Sbjct 758220 AGGCGCCTTCATC 758232 >seq5 Length=1520521 Score = 100 bits (110), Expect = 7e-16 Identities = 314/479 (66%), Gaps = 8/479 (2%) Strand=Plus/Plus Query 111313 ATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGT 111372 |||| || || | ||||||||| | || | | |||||| | || ||| | || | Sbjct 1131714 ATTTCCCCCTGTTAACAACAAAGAAATTATTTCTAAGGGGAATAATTGAGGAATTGCTTT 1131773 Query 111373 GGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAA-AATGTAAAAATTTGG 111431 |||| ||||| ||| ||||| | || | ||| | || || |||| ||| ||| Sbjct 1131774 GGTTCATTCGAGGAGAAACAAACGGGAAC-ACTTTGTTAAAGAAGAACGTAAGAATATGG 1131832 Query 111432 GATGGAAATGGATCACGTGACTTTCTAGATT-CAGTTGGTCTTGTCGACAACGAAGAAGG 111490 || | ||||||| | | || || || || ||| | | || ||| |||| Sbjct 1131833 GAAGCAAATGGAACGAGGGAGTTCCTCGACAACAGGAAATTATTTC-ACAGAGAAGTGAA 1131891 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 ||| | ||||| |||| || || || ||| | ||||||||||| || |||| || ||| Sbjct 1131892 TGACTTGGGACCCATTTATGGTTTCCAGTGGAGACACTTTGGTGCTGAATACACAAACAT 1131951 Query 111551 GCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAA 111610 ||| ||| || || | || || |||||| | ||||| || || ||| || Sbjct 1131952 GCATGACAATTACGAAGATAAAGGTGTAGACCAATTAAAAAATGTTATCCATTTAATAAA 1132011 Query 111611 GAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAA 111670 || | ||||| | | | ||||| | |||||||||| ||| | ||||| | Sbjct 1132012 AAATGAACCAACAAGTAGGAGAATTATCCTTTGTGCATGGAATGTAAAGGATTTGGATCA 1132071 Query 111671 AATGGCACTTCCACCATGTC--ATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTT 111728 |||||| | || || |||| ||||||||| || ||||| || ||| |||| || Sbjct 1132072 GATGGCATTACCTCCTTGTCATATCTTATGT--CAATTTTACGTTTTCGATGGGAAACTA 1132129 Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGC 111787 || ||| |||||||| | ||| ||| | |||||||| || || || || ||||| Sbjct 1132130 TCCTGCATTATGTATCAAAGGTCTTGTGACTTGGGTCTTGGGGTCCCCTTCAACATTGC 1132188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353366210948