Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq4 131 1e-25 >seq4 Length=1862670 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| || |||||||| || || || | || |||||| Sbjct 692741 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 692800 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || || |||||| || ||||| || ||||| ||||||| Sbjct 692801 GACACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAG 692860 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||||| |||| ||| |||||||||||||| |||| | |||| || | || || ||| Sbjct 692861 CAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAAC 692920 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| || || || |||| |||| || | || ||||| || Sbjct 692921 ATCCAAAAGGAATCCACGTTACACTTGGTCTTACGTTTACGAGGTGG 692967 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || || || || |||||||| ||||| || | || |||||| | Sbjct 692969 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 693028 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | |||||| |||||| || ||||| || |||| ||| || Sbjct 693029 GACACGATTGAAAATGTAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 693088 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || |||||||||| ||| ||||||||||| ||||||| | |||| || | || |||||| Sbjct 693089 CAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTATAAC 693148 Query 115466 ATTCAAAAAGAGTCTACTATACA 115488 || ||||| || || || |||| Sbjct 693149 ATCCAAAAGGAATCCACCTTACA 693171 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || || || || |||||||| || || || | || |||||| | Sbjct 692513 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 692572 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || || |||||| || ||||| || |||| ||| || Sbjct 692573 GACACGATTGAAAATGTGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 692632 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||||| |||| ||| ||||||||||| ||||||| | |||| || | || || ||| Sbjct 692633 CAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAAC 692692 Query 115466 ATTCAAAAAGAGTCTACTATACA 115488 || ||||| || ||||| |||| Sbjct 692693 ATCCAAAAGGAATCTACATTACA 692715 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 115313 GGAAAAACCATTACCGTCGAAACGGAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAA 115372 ||||||||||| || | || |||||| |||||| ||| | | || || ||| Sbjct 692312 GGAAAAACCATCACTTTGGACGTGGAGTCATCCGACACAATTGAAAATGTGAAGGCTAAA 692371 Query 115373 ATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAA 115432 ||| || ||||| || |||| ||| || || |||||||||| ||| ||||| ||| Sbjct 692372 ATTCAGGACAAAGAGGGAATCCCACCTGACCAACAGAGACTTATTTTTGCTGGCAAGCAA 692431 Query 115433 TTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATG 115492 ||||| |||| | |||| || | || || ||||| ||||| || || || |||| || Sbjct 692432 TTAGAGGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCCACCTTACACTTG 692491 Query 115493 GTGTTGAGATTGCGAGGAGG 115512 ||||| | || ||||| || Sbjct 692492 GTGTTACGTTTACGAGGTGG 692511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425343927425680