Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq4 113 4e-20 seq11 102 7e-17 >seq4 Length=1862670 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16739 GTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCC 16798 ||||| |||||||| ||||| ||||| | || |||| | | || |||||||||||||| Sbjct 693165 GTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCA 693106 Query 16799 GCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTC 16858 ||| ||||||| | ||||||||| || | ||||||||||| ||||| | || Sbjct 693105 GCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTCGCTTTT 693046 Query 16859 ACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTT 16918 || | | | |||||| | |||| |||| |||||||| ||||| || || || Sbjct 693045 ACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATGGTCTTTCCCGTTAGGGTC 692986 Query 16919 TTGACAAAAATCTGCAT 16935 || || ||||| ||||| Sbjct 692985 TTCACGAAAATTTGCAT 692969 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16739 GTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCC 16798 || || |||||||| ||||||||||| | || |||| | | || |||||||||||||| Sbjct 692709 GTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCA 692650 Query 16799 GCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTC 16858 ||| |||| || | ||||||||| || | ||||||||||| ||||| |||| Sbjct 692649 GCAAAAATGAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTGGCCTTC 692590 Query 16859 ACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTT 16918 || | | | |||||| | |||| |||| ||||| || ||||| || || || Sbjct 692589 ACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATAGTCTTTCCCGTTAGAGTC 692530 Query 16919 TTGACAAAAATCTGCAT 16935 || || ||||| ||||| Sbjct 692529 TTCACGAAAATTTGCAT 692513 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 16739 GTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCC 16798 ||||| |||||||| ||||||||||| | || |||| | | ||||| ||||| ||||| Sbjct 692481 GTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCCTCTAATTGCTTGCCA 692422 Query 16799 GCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTC 16858 ||| ||||||| | ||||||||| || | ||||||||||| ||||| |||| Sbjct 692421 GCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTAGCCTTC 692362 Query 16859 ACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCC 16908 || | | | |||||| | |||| |||| |||||||||||||| Sbjct 692361 ACATTTTCAATTGTGTCGGATGACTCCACGTCCAAAGTGATGGTTTTTCC 692312 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||||| | | |||| || | |||||| |||||||| ||||||||||| | | Sbjct 692967 CCACCTCGTAAACGTAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGAC 692908 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | ||||| ||||||||||| ||| |||| || | || || || || Sbjct 692907 AAGGTTCTTCCATCCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGG 692848 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||||||||| ||||| |||||| | | | ||||| | |||| Sbjct 692847 ATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCACA 692788 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || ||||| || || ||||| || ||||| ||||| Sbjct 692787 TCCAAAGTGATAGTCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 692741 >seq11 Length=2627280 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 16726 TACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTC 16785 ||||| |||| ||||||||||| || ||||||||||| |||| || | ||||| Sbjct 280454 TACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTC 280395 Query 16786 CAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGC 16845 ||| || || || | ||| || |||| ||| ||||| || | || || || || | Sbjct 280394 CAACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCCTC 280335 Query 16846 AATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTT 16905 ||||| ||| || | | | || ||| | |||| |||| |||||||||||| Sbjct 280334 AATTTTTGACTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTT 280275 Query 16906 TCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||||| | ||||| || || |||||||||||| Sbjct 280274 TCCGGTTAATGTTTTTACGAATATCTGCATTTTG 280241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087930881860