Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4 141 8e-29 seq11 82.4 7e-11 >seq4 Length=1862670 Score = 141 bits (156), Expect = 8e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || ||||||| | || |||||||| || Sbjct 692969 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 693028 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || |||| |||| ||| |||||||| || || ||||||||| Sbjct 693029 GACACGATTGAA--AATGTAAAAGCGAAAATTCAG-GACAAAGAGGGAATCCCACCTGAC 693085 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | |||||||||| ||||||||||| ||||||| | || || || || Sbjct 693086 CAACAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTAT 693145 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| |||||||| |||| ||||| ||| | || ||||| || Sbjct 693146 AACATCCAAAAGGAATCCACCTTACACTTAGTACTACGTCTGAGAGGTGG 693195 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | || || || | ||||| | || |||||||| || Sbjct 692513 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 692572 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| | |||| ||| |||||||| || || ||||||||||| Sbjct 692573 GACACGATTGAAAATGTGAAGGCCAAAATTCAG-GACAAAGAGGGAATCCCACCTGACCA 692631 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | |||||||| ||||||||||| ||||||| | || || || ||||| Sbjct 692632 ACAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAA 692691 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||| || |||| ||||| ||| | || ||||| || Sbjct 692692 CATCCAAAAGGAATCTACATTACACTTAGTACTACGTCTCAGAGGTGG 692739 Score = 122 bits (134), Expect = 8e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 25026 GGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CAAAA 25084 || ||| ||||||| | || |||||||| || ||||| || || ||||| | ||| Sbjct 692312 GGAAAAACCATCACTTTGGACGTGGAGTCATCCGACACAATTGAAAATGTGAAGGCTAAA 692371 Query 25085 AATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACA 25144 | ||| |||||||| || || ||||||||||||||| | |||||||||| ||||| || Sbjct 692372 ATTCAG-GACAAAGAGGGAATCCCACCTGACCAACAGAGACTTATTTTTGCTGGCAAGCA 692430 Query 25145 ATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTT 25204 |||||| |||| | || || || ||||| || ||||| |||||||| |||| || Sbjct 692431 ATTAGAGGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCCACCTTACACTT 692490 Query 25205 AGTGCTAAGGCTAAGAGGAGG 25225 ||| || | || |||| || Sbjct 692491 GGTGTTACGTTTACGAGGTGG 692511 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || || || | ||||| | || |||||||| ||| Sbjct 692741 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 692800 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| | |||| ||| |||||||| || || || ||||| || Sbjct 692801 GACACAATTGAAAATGTGAAGGCTAAAATTCAG-GACAAAGAGGGAATCCCCCCTGATCA 692859 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | |||||||| |||||||||||||| |||| | || || || ||||| Sbjct 692860 GCAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAA 692919 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||||||| |||| || || || | || |||| || Sbjct 692920 CATCCAAAAGGAATCCACGTTACACTTGGTCTTACGTTTACGAGGTGG 692967 >seq11 Length=2627280 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| ||||| || || ||||| ||| ||||||| | || |||||| | || Sbjct 280244 AATGCAGATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCATC 280303 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || | | ||| |||||| || || ||||| || ||||||||||| Sbjct 280304 CGAAACGATTAGGAATGTTAAGTCAAAAATTGAGGATAAGGAAGGAATCCCACCTGACCA 280363 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || | | | || || || || || |||| | ||||| || ||||| Sbjct 280364 GCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGACTACAA 280423 Query 25178 TATTCAAAAAGAATCCAC 25195 || || || || ||||| Sbjct 280424 CATCCAGAAGGAGTCCAC 280441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327926063410