Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq13 118 1e-21 >seq13 Length=1997354 Score = 118 bits (130), Expect = 1e-21 Identities = 367/562 (65%), Gaps = 11/562 (2%) Strand=Plus/Minus Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 |||||| || || | |||||| ||||| || | ||| || ||||| || | || | Sbjct 1648206 AAAGTCTGTGTGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATG 1648147 Query 93157 TAACA-GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 ||| || || | ||||| | |||||| || | | ||||| ||| ||| | |||| Sbjct 1648146 CAACTTGTTCT-GCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATAC 1648088 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATTTGCGGAATTACTGCTGAT 93273 | ||||| ||| || || || | ||| ||||| | ||| || | | || Sbjct 1648087 CCTCCACACAGGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGG-----TATCGTTTAT 1648033 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||| || ||||| ||||| ||||| | || | |||| || |||| ||| Sbjct 1648032 CCACTTGGCTGCCCACAACGCTTTGTTCTTCACTGCGGGAATATTTTCAATCGCGTGAAA 1647973 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 |||| || || | | || |||||| | || ||||||| |||| | || Sbjct 1647972 AAGGTTCATTCTTTCCTTCTCGTCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTC 1647913 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA-GCTTCCGTGATCT 93452 || |||| ||| || | ||||| ||||| ||| ||| ||| || ||||| || | Sbjct 1647912 TGAGTGGATATTTTCAACAGCAATCTGGAAGGAGTA-AAATTTCTTTGCCTCCGTAATTT 1647854 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 |||||| | ||||| | | | | |||||| || || ||||| ||||| | Sbjct 1647853 GCACTTGGCGTAAAAATTTGCTTGCTAAATTTTCCAACACAATTCCATCACTCGCTGCGA 1647794 Query 93513 aaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGG 93572 | |||||||| | ||| ||||| |||||||| |||| || || | || || |||| Sbjct 1647793 AGAAAGCCAACACATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTT 1647734 Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 | ||| | || | || | |||||| | ||||| || || ||||| |||||||||| Sbjct 1647733 TCAAATCGCTAGACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGT 1647674 Query 93633 ACATATCCCATATGTCTTGATA 93654 | | |||||| | |||| |||| Sbjct 1647673 AAAAATCCCACACGTCTGGATA 1647652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860702549360