Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4 131 1e-25 >seq4 Length=1862670 Score = 131 bits (144), Expect = 1e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || |||| || || || ||||| | || ||||| | || Sbjct 692969 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 693028 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| |||||||| ||||| ||||| || ||||| || ||| Sbjct 693029 GACACGATTGAAAATGTAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 693088 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| |||||||| || || ||| | ||| | || || || ||| Sbjct 693089 CAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTATAAC 693148 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTCCATTT 22455 || ||||| ||||||||| |||| ||||| | || || | || |||||| |||| Sbjct 693149 ATCCAAAAGGAATCCACCTTACACTTAGTACTACGTCTGAGAGGTGGTTTTTAATTT 693205 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| |||| || || || ||||| | || ||||| | | Sbjct 692741 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 692800 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||| ||||| ||||| || || || ||||| Sbjct 692801 GACACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAG 692860 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| |||||||| ||||||||| | ||| | || || |||||| Sbjct 692861 CAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAAC 692920 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| |||||||| |||| || || || || || || || ||| Sbjct 692921 ATCCAAAAGGAATCCACGTTACACTTGGTCTTACGTTTACGAGGTGGT 692968 Score = 120 bits (132), Expect = 3e-22 Identities = 605/944 (64%), Gaps = 45/944 (5%) Strand=Plus/Minus Query 128929 TGATCAATAAAGGGGCCGCGATCGGCAGCCATACCAATCAAATTTTTCACTTTCATTTCC 128988 || || || |||| ||| || ||||| |||||| |||| | || ||| || || ||| Sbjct 758237 TGGTCGATGAAGGCGCCTCGGTCGGCCGCCATATCAATGATGTTCTTCTGCTTGATCTCC 758178 Query 128989 CACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCTTCAATGTTCTGCACGCTG 129048 || || ||||| || ||||| ||| || || || ||||| ||| | || || || Sbjct 758177 CAAACGGTTTTATAGAGCTCCTTCAAGTCGTTAGGAATTTCGCTAATATATTGGACACTT 758118 Query 129049 CCGTTGTTTGCAATAATTT--TGTTTCGCATCTGTTCGTTGTACAAATTCAGTTTGATCA 129106 ||||||| ||||| | | || ||| || | || | | | | || |||| Sbjct 758117 CCGTTGTGGGCAATGAGCTGCTGCTTC--ATGTCCTCATCCCAGAGAC-CAC---GATCG 758064 Query 129107 AATCG-TCGGTCAA---GTATTTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGA 129162 || | || |||| || | ||| | ||| || || || || ||| | || Sbjct 758063 AAGAGGTCCTTCAACAGGTGTGGGTTCACTACGAAGAACTCTCCACTCAGAACCCTCCTG 758004 Query 129163 ACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTT 129222 ||||||||| | ||| |||| ||||| || || |||||||| | ||||| | ||| Sbjct 758003 TAGTAAATGTTACTCGTGTACGGTTCAAAAGACTCGTTGTTGCCAAGAATTTGTGACGTC 757944 Query 129223 GTCGCGGTGGGCATGTAAGCCACGCAA-AGCGAGTTTCGCAAACCGTGCTGTTTAATGTC 129281 | || || ||||| |||| ||| ||||| |||| || ||||||| || || | Sbjct 757943 GAAGCAGTAGGCATAGGTGCCA-GCAGGAGCGAATTTCTTAACCCGTGCTTCTTTATATT 757885 Query 129282 tttttttAATTGTGTCCAGTCCCACATCGATGTGGGTG----TGTGATTCCACAAGTCGT 129337 || |||| ||| ||||| || ||| | || |||||||| |||| Sbjct 757884 CGCCTTCAATTTATCCCAATCCCA-ATATTTGTTGTCCACCTTGACATTCCACATGTCGA 757826 Query 129338 ATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGGAATCGTGCACGCCGTAAGCTT 129397 | || | || || || || ||||| ||||| || | ||||| ||| Sbjct 757825 ACTGAAGAATTCCTTGGCTAGCTGGACTACCCTGGTAGGTCTCATAAGGTCCGTACACTT 757766 Query 129398 TTGCCAATTC---GCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAATTTTGG 129454 ||||||||| | | || ||||| || || |||| ||||||||| |||| | Sbjct 757765 GTGCCAATTCCATGGACATC---TCCAAAGCAGCATAATACATTGTTTCGAAAATTCTTT 757709 Query 129455 TGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCA---TACGCAACATGGCAAATGTGT 129511 | || || | || || ||| ||| || || || | | |||| || |||| Sbjct 757708 TATTTAATTCCTTCGCAGAATCGGATTCATATGGGTATCTAAGAAGCATG---AAGGTGT 757652 Query 129512 CGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCG 129571 | ||||| ||||| | || | || ||||||| ||| | | |||||| || ||| Sbjct 757651 CTGCCAAGCCTTGTACTCCTATCCCTATGGGTCTGTGTCTCTTGTTGGATCGTTCAGCCT 757592 Query 129572 ACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATT-CTTGACCACAATTTTC 129630 | || || ||||| || | |||||||||| || || || | || | |||||| Sbjct 757591 CCTGCACAGGGTAGTAATTCCTCTCTATAATTTGGTCCAAGTTACGTGTA-ATAATTTTG 757533 Query 129631 GTTACGTATTTTAACATTTC--AAAATTGTACTCGCCTACATCGATGTCGACAAATTGAT 129688 || | | | || |||| ||||||| | || ||| || | ||||||||||| Sbjct 757532 GTAA--TTTCGTACAGTTTCTTAAAATTGAATTCTCCTTTTTCCACGTCGACAAATT--- 757478 Query 129689 TGACACAA----ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCG 129744 || ||||| || ||||||||||| || ||||| ||||| | | | | ||||| Sbjct 757477 TG-CACAACGCGATGGAGGCCAAATTACATACGGCCACTTCGTCTGGGGAAGTATACTCA 757419 Query 129745 ACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTC 129804 | ||| || || | |||||| ||| || || ||||| | |||||| || ||| Sbjct 757418 ATAATCTCACAACAGAGGTTACTACATTTTATCGTCCCCAAGTTCTTTTGGTTGGACTTC 757359 Query 129805 ATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 ||| |||| |||||| |||| |||||| || |||||||| Sbjct 757358 GCGTTACAAGAATCTTTATACAACATGTAGGGAACACCCGTTTC 757315 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| |||| || || || ||||| | || ||||| | || Sbjct 692513 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 692572 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||| ||||| ||||| || ||||| || ||| Sbjct 692573 GACACGATTGAAAATGTGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTGACCAA 692632 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| |||||||| || || ||| | ||| | || || |||||| Sbjct 692633 CAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTACAAC 692692 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| ||||| || |||| ||||| Sbjct 692693 ATCCAAAAGGAATCTACATTACACTTAGT 692721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727928383910