Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4 163 5e-35 seq11 125 1e-23 >seq4 Length=1862670 Score = 163 bits (180), Expect = 5e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || || | ||| ||||||| ||||| || |||||||||||||| || || | || || Sbjct 693186 AGACGTAGTACTAAGTGTAAGGTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTT 693127 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| || || || || || || || ||||| |||||||| ||||| || || || Sbjct 693126 CCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCT 693067 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| ||||| || || || || || || ||||| | ||| || || ||||| ||| Sbjct 693066 TTGTCCTGAATTTTCGCTTTTACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTG 693007 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| |||||||| ||||| || ||||| Sbjct 693006 ATGGTCTTTCCCGTTAGGGTCTTCACGAAAATTTGCAT 692969 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || |||||||||| |||||| || ||||||||||| || || || | || || ||| Sbjct 692955 CGTAAGACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCA 692896 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || ||||| || || || || || ||||||||||| || || || || || || || ||| Sbjct 692895 TCCTCTAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTTG 692836 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || ||||| || ||||| || || || ||||| | ||| || || ||||| ||||| Sbjct 692835 TCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGATA 692776 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| ||||| || ||||| || ||||| Sbjct 692775 GTCTTTCCCGTTAGGGTTTTCACGAAAATTTGCAT 692741 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || || | ||| ||||||| || || || ||||||||||| || || || | || || Sbjct 692730 AGACGTAGTACTAAGTGTAATGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTT 692671 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| || || || || || || |||||||| |||||||| ||||| || || || Sbjct 692670 CCATCTTCCAATTGTTTGCCAGCAAAAATGAGTCTCTGTTGGTCAGGTGGGATTCCCTCT 692611 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| ||||| || ||||| || || || ||||| | ||| || || ||||| ||| Sbjct 692610 TTGTCCTGAATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTG 692551 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| || ||||| ||||| || ||||| Sbjct 692550 ATAGTCTTTCCCGTTAGAGTCTTCACGAAAATTTGCAT 692513 Score = 145 bits (160), Expect = 1e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 || || |||||||||| ||||| || ||||||||||| || || || | || || ||| Sbjct 692499 CGTAACACCAAGTGTAAGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCA 692440 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 || ||||| ||||| || || || || ||||| |||||||| ||||| || || || ||| Sbjct 692439 TCCTCTAATTGCTTGCCAGCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTG 692380 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || ||||| || ||||| || || || ||||| | ||| || || ||||| |||||| Sbjct 692379 TCCTGAATTTTAGCCTTCACATTTTCAATTGTGTCGGATGACTCCACGTCCAAAGTGATG 692320 Query 68427 GTTTTTCC 68434 |||||||| Sbjct 692319 GTTTTTCC 692312 >seq11 Length=2627280 Score = 125 bits (138), Expect = 1e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||||||| | |||||||| || |||||||| || || | | ||| |||| || Sbjct 280454 TACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTC 280395 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 |||||||| || | |||| || || || ||||| ||||| || |||||||| || | Sbjct 280394 CAACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCCTC 280335 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| |||| ||| || | || || || | || || || |||| |||||||||||| Sbjct 280334 AATTTTTGACTTAACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTT 280275 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTA 68468 ||| || | || || ||||||||||||||| || || Sbjct 280274 TCCGGTTAATGTTTTTACGAATATCTGCATTTTGGTA 280238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622238716080