Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq4 102 6e-17 seq11 86.0 4e-12 >seq4 Length=1862670 Score = 102 bits (112), Expect = 6e-17 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 21918 AAAATTGCCGATAAAGAGGGTGT---ACCTGTAAACCAACAGAGACTTATCTTTGCTGGC 21974 |||||| || |||||||| | ||||| |||||||||||||||| ||||||||| Sbjct 692369 AAAATTCAGGACAAAGAGGGAATCCCACCTG---ACCAACAGAGACTTATTTTTGCTGGC 692425 Query 21975 AAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTT 22034 || ||| |||| ||| || ||| || | || ||||| || || |||||||| || | Sbjct 692426 AAGCAATTAGAGGATGGAAGAACCTTGTCTGACTACAACATCCAAAAGGAATCCACCTTA 692485 Query 22035 CATATGGTATTACGTTTACGAGGAGG 22060 || |||| |||||||||||||| || Sbjct 692486 CACTTGGTGTTACGTTTACGAGGTGG 692511 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || ||||||| || || || || |||| ||| | | Sbjct 692513 ATGCAAATTTTCGTGAAGACTCTAACGGGAAAGACTATCACTTTGGACGTGGAGTCATCC 692572 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || ||| | | || | ||| |||||| || |||||||| | ||||| || Sbjct 692573 GACACGATTGAAAATGTGAAGGCCAAAATTCAGGACAAAGAGGGAATCCCACCTG---AC 692629 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||||||||| || ||||||||||||||| | |||||| || ||| || | || ||| Sbjct 692630 CAACAGAGACTCATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTAC 692689 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || ||||||||||| | || | ||| ||||| | |||| || Sbjct 692690 AACATCCAAAAGGAATCTACATTACACTTAGTACTACGTCTCAGAGGTGG 692739 Score = 96.9 bits (106), Expect = 2e-15 Identities = 165/238 (69%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || ||||||| || ||||| || |||| ||| | | Sbjct 692969 ATGCAAATTTTCGTGAAGACCCTAACGGGAAAGACCATCACTTTGGACGTGGAGTCATCC 693028 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || ||| | | || | || |||||| || |||||||| | ||||| || Sbjct 693029 GACACGATTGAAAATGTAAAAGCGAAAATTCAGGACAAAGAGGGAATCCCACCTG---AC 693085 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 |||||||||||||| ||||||||||||||| | |||||| || ||| || | || || Sbjct 693086 CAACAGAGACTTATTTTTGCTGGCAAACAATTGGAAGATGGAAGAACCTTGTCTGACTAT 693145 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAAT 22068 || || || |||||||| || | || | ||| ||||| | |||| || | ||||| Sbjct 693146 AACATCCAAAAGGAATCCACCTTACACTTAGTACTACGTCTGAGAGGTGGTTTTTAAT 693203 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||| ||||||| || || || || |||| ||| | | Sbjct 692741 ATGCAAATTTTCGTGAAAACCCTAACGGGAAAGACTATCACTTTGGATGTGGAGTCATCT 692800 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| || |||||||| | || | || Sbjct 692801 GACACAATTGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCCCCTGATCAG 692860 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || ||||||||||||||| |||| ||| || ||| || | || ||||| Sbjct 692861 CAAAGACTCATTTTTGCTGGCAAACAATTAGAGGATGGAAGAACCTTGTCTGACTACAAC 692920 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| || | || |||| |||||||||||||| || Sbjct 692921 ATCCAAAAGGAATCCACGTTACACTTGGTCTTACGTTTACGAGGTGG 692967 >seq11 Length=2627280 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| ||||| | ||||||||||| || |||||||| ||| |||| ||| || Sbjct 280241 CAAAATGCAGATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGC 280300 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGT 21946 | |||||| | || ||||| |||||||| ||||| || || | ||||| Sbjct 280301 ATCCGAAACGATTAGGAATGTTAAGTCAAAAATTGAGGATAAGGAAGGAATCCCACCTG- 280359 Query 21947 AAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGA 22006 |||| ||||| || || | | | || || || | || ||| | | | |||| || Sbjct 280360 --ACCAGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGA 280417 Query 22007 TTACAATATTCAGAAGGAATCTACTCTTCATATGGTA 22043 ||||| || |||||||| || || | || ||||| Sbjct 280418 CTACAACATCCAGAAGGAGTCCACCTTGCACTTGGTA 280454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124738894956