Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 3e-15 seq11 86.0 6e-12 >seq4 Length=1862670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 ||| ||||| ||||| |||||||| || | | ||| | | || || | || ||||| Sbjct 692938 CGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCCTCTAATTGTTTGCC 692879 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 ||| ||||||| | ||||| || || || ||||| ||||| || || ||||| ||| Sbjct 692878 AGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTTGTCCTGAATTTTAGCCTT 692819 Query 64366 TACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||| ||| | ||||| || | ||| | ||||| || || | || Sbjct 692818 CACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGATAGTCTTTCCCGTTAGGGT 692759 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| |||||||||||||| Sbjct 692758 TTTCACGAAAATTTGCAT 692741 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| |||||||| || | | ||| | | ||||| | || ||||| Sbjct 692709 GTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCA 692650 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| ||||||| | ||| ||||| || || ||||| ||||| || || ||||| ||| Sbjct 692649 GCAAAAATGAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTGGCCTTC 692590 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | ||||| || | ||| | ||||| || || | ||| Sbjct 692589 ACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATAGTCTTTCCCGTTAGAGTC 692530 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||||||||| Sbjct 692529 TTCACGAAAATTTGCAT 692513 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| ||||| || || | | ||| | | ||||| | || ||||| Sbjct 693165 GTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCA 693106 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || | ||| ||||| || || ||||| ||||| || || ||||| ||| Sbjct 693105 GCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTCGCTTTT 693046 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | ||||| || | ||| | |||||| || || | || Sbjct 693045 ACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATGGTCTTTCCCGTTAGGGTC 692986 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||||||||| Sbjct 692985 TTCACGAAAATTTGCAT 692969 >seq11 Length=2627280 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || || || | | || || | |||||| || Sbjct 280441 GTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCCAACTGCTTTCCT 280382 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 | ||| || |||| ||||||||| || || |||||||| || || | |||||| ||| Sbjct 280381 GAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCCTCAATTTTTGACTTA 280322 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| | | || || || ||||| || | || | ||| || ||||| || ||| Sbjct 280321 ACATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCGGTTAATGTT 280262 Query 64427 TTTACGAAAATTTGCATTTT 64446 |||||||| || |||||||| Sbjct 280261 TTTACGAATATCTGCATTTT 280242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644712562160