Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4 138 3e-27 seq11 87.8 4e-12 >seq4 Length=1862670 Score = 138 bits (152), Expect = 3e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||||| ||||||||||| ||| || ||||||||||||| || || || Sbjct 692709 GTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCA 692650 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || ||||| | ||| ||||| || ||||| ||| |||||||| || |||| Sbjct 692649 GCAAAAATGAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTGGCCTTC 692590 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | ||||| | || || || ||||| ||||| ||||| ||||| ||||| Sbjct 692589 ACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATAGTCTTTCCCGTTAGAGTC 692530 Query 199613 TTCACAAAAATTTG 199626 ||||| |||||||| Sbjct 692529 TTCACGAAAATTTG 692516 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| | ||| | || || |||||||||| ||||||||||| ||| || |||||||| || Sbjct 692950 GACCAAGTGTAACGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCCTC 692891 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 | || || || || || ||||| | ||||| || || ||||| ||| ||||| Sbjct 692890 TAATTGTTTGCCAGCAAAAATGAGTCTTTGCTGATCAGGGGGGATTCCCTCTTTGTCCTG 692831 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 ||| || |||||| ||| | ||||| | || || |||||||| ||||| ||||| Sbjct 692830 AATTTTAGCCTTCACATTTTCAATTGTGTCAGATGACTCCACATCCAAAGTGATAGTCTT 692771 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || |||||||| |||||||| Sbjct 692770 TCCCGTTAGGGTTTTCACGAAAATTTG 692744 Score = 120 bits (132), Expect = 7e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||||| ||| ||||||| ||| || ||||||||||||| || || || Sbjct 693165 GTGGATTCCTTTTGGATGTTATAGTCAGACAAGGTTCTTCCATCTTCCAATTGTTTGCCA 693106 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 || || || || | ||| ||||| || ||||| ||| |||||||| ||| || || Sbjct 693105 GCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAAT-TTTCGCTTT 693047 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||| | ||||| | || || || ||||| ||||| ||||| ||||| || || Sbjct 693046 TACATTTTCAATCGTGTCGGATGACTCCACGTCCAAAGTGATGGTCTTTCCCGTTAGGGT 692987 Query 199612 TTTCACAAAAATTTG 199626 ||||| |||||||| Sbjct 692986 CTTCACGAAAATTTG 692972 Score = 95.1 bits (104), Expect = 3e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||||| ||||||||||| ||| || |||||||| || | ||||| || Sbjct 692481 GTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTTCCATCCTCTAATTGCTTGCCA 692422 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || || || | ||| ||||| || ||||| ||| |||||||| || |||| Sbjct 692421 GCAAAAATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCTTTGTCCTGAATTTTAGCCTTC 692362 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACC 199602 || ||| | ||||| | || || || ||||| ||||| || || || Sbjct 692361 ACATTTTCAATTGTGTCGGATGACTCCACGTCCAAAGTGATGGTTTTTCC 692312 >seq11 Length=2627280 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/205 (70%), Gaps = 7/205 (3%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || |||||||| |||| |||||||||||||| | ||| |||| |||| ||||||||| Sbjct 280441 GTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCCAACTGCTTTCCT 280382 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 | | || || | ||||||||| || |||||||| |||| ||| ||| ||| Sbjct 280381 GAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCCTCAATTTTTGACTTA 280322 Query 199553 ACGGATTC--GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAG 199610 || |||| | || || | || || ||||||| ||||| || || || || | | Sbjct 280321 AC--ATTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCGGTTAATG 280264 Query 199611 TTTTCACAAAAATTTGGTACATTTT 199635 |||| || || || || |||||| Sbjct 280263 TTTTTACGAATATCTG---CATTTT 280242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921388530938