Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4 152 6e-32 seq12 87.8 2e-12 seq6 84.2 3e-11 >seq4 Length=1862670 Score = 152 bits (168), Expect = 6e-32 Identities = 962/1533 (63%), Gaps = 32/1533 (2%) Strand=Plus/Plus Query 111711 CACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTC 111770 ||||||||||| || | ||||| |||| || || ||||| |||||||| |||||| Sbjct 756718 CACGCAACACCTACGTTGTTCAATTCTGGGACGCCCAGACCGCAAATGTCGTCCTGTTTC 756777 Query 111771 CTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCC 111830 ||| | | || | ||||| || | || |||| || || || | | || ||| Sbjct 756778 CTTCTCTGTATGAAAGCTGATTCGATTGAAGGTATTTTCGAGACGCTGAAACAGTGCGCC 756837 Query 111831 CAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAG 111890 | || || ||||||||| || || | | || ||| | |||| |||| Sbjct 756838 CTGATTAGCAAAACGGCTGGTGGAATTGGAGTAGCGGTACAGGATATTAGAG--GACAAA 756895 Query 111891 TCTCGT--ATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTAT 111948 ||| | |||||||| || || || ||| | || | | |||||||| | || | Sbjct 756896 ACTCCTACATTAGAGGAACCAACGGAATATCCAACGGGTTAGTGCCAATGCTGAGGGTGT 756955 Query 111949 TTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCG---TCGCAAGGGATCTATCGCAG 112005 | || | ||||| | |||||| |||||| ||| | | |||||||| | |||| Sbjct 756956 TCAATGATACAGCTAGATATGTAGACCAAGGTGGCGGAAAGAGAAAGGGATCCTTTGCAG 757015 Query 112006 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 112065 | || | || ||||||||| | ||||| | || || || || | ||| || || | Sbjct 757016 TGTACATCGAACCATGGCACTCAGATATTTTCGAATTTCTAGACCTTCGTAAAAATCACG 757075 Query 112066 GTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTC 112124 | | ||||| | | || | || || |||| ||| | ||| | || || || ||| Sbjct 757076 GGAAAGAGGA-ACTAAGAGCTAGAGACCTTTTCTATGCTGTATGGGTCCCTGACCTTTTC 757134 Query 112125 ATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGT 112184 ||||||||||| | || | | |||||| || | | || || | | || || Sbjct 757135 ATGAAGAGAGTAAAAGAAAATCAGAATTGGACTTTGATGTGCCCGAATGAATGTCCAGGG 757194 Query 112185 CTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGT 112244 | || | ||||||||| || ||| || ||| ||| || ||||||||| || Sbjct 757195 TTAAGTGAGTCTTGGGGTGAGGAATTCGAAAAGCTATACTTAAAATATGAGGAAGAAGGT 757254 Query 112245 CGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACC 112304 || | || || | || ||| | ||| || ||| | | ||| | Sbjct 757255 ATGGGCAAAAAAACTGTCCTGGCGCAAGATCTATGGTTTGCCATTTTGCAAAGTCAGATA 757314 Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364 || || ||| || || ||| | || ||||| | |||||| ||| || |||||| Sbjct 757315 GAAACGGGTGTTCCCTACATGTTGTATAAAGATTCTTGTAACGCGAAGTCCAACCAAAAG 757374 Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424 || ||||| ||| || || ||||||||| || || | || | ||| | | Sbjct 757375 AACTTGGGGACGATAAAATGTAGTAACCTCTGTTGTGAGATTATTGAGTATACTTCCCCA 757434 Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAG 112484 || || ||| || ||||| | || || ||||| | ||| | ||| || | | Sbjct 757435 GACGAAGTGGCCGTATGTAATTTGGCCTCCATCGCGTTGTGCAAATTTGTCGA-CGTGGA 757493 Query 112485 ACAAAGA-CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCT 112543 | || || ||| ||| | | ||||| ||||| |||| |||| | | ||| ||| | Sbjct 757494 AAAAGGAGAATTCAATTTTAAGAAACTGTACGAAATTACCAAAATTATTACACGTAACTT 757553 Query 112544 AAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATAT 112600 || | |||| || || |||| ||||| || ||| ||| || ||| || | Sbjct 757554 GGACCAAATTATAGAGAGGAATTACTACCCTGTGCAGGAGGCTGAACG---ATCCAACAA 757610 Query 112601 GAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCG 112660 ||||||| | || || || | || || ||||| | || || ||||| ||| | | Sbjct 757611 GAGACACAGACCCATAGGGATAGGAGTACAAGGCTTGGCAGACACCTTCATGCTTCTTAG 757670 Query 112661 CCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTA 112720 || ||| ||| ||||| ||||||||| | ||| | || || || |||||||| Sbjct 757671 ATACCCATATGAATCCGATTCTGCGAAGGAATTAAATAAAAGAATTTTCGAAACAATGTA 757730 Query 112721 TCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 112780 | | || ||| | ||| | ||| |||||| | || | || || ||||| |||| Sbjct 757731 TTATGCTGCTTTGGAGATGTCCATGGAATTGGCACAAGTGTACGGACCTTATGAGACCTA 757790 Query 112781 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGG-----GAAGGTGAG 112835 ||||| ||||||| ||||| | ||||| || || |||||| |||||| | Sbjct 757791 CCAGGGTAGTCCAGCTAGCCAAGGAATTCTTCAGTTCGACATGTGGAATGTCAAGGTG-G 757849 Query 112836 ACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGT 112895 | ||| | | || ||||| | |||| || ||| || | || | | Sbjct 757850 A-CAACAAATATTGGGATTGGGATAAATTGAAGGCGAATATAAAGAAGCACGGGTTAAGA 757908 Query 112896 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 112955 || || || ||||||| ||||| || || || || ||||||| | || || || Sbjct 757909 AATTCGCTCCTGCTGGCACCTATGCCTACTGCTTCGACGTCACAAATTCTTGGCAACAAC 757968 Query 112956 GAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT 113015 || | |||||||| ||||||| ||||| || || || || |||||||| Sbjct 757969 GAGTCTTTTGAACCGTACACGAGTAACATTTACTACAGGAGGGTTCTGAGTGGAGAGTTC 758028 Query 113016 GTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGAT 113075 | | || ||| || || || | |||||| || |||||||||| |||| Sbjct 758029 TTCGTAGTGAACCCACACCTGTTGAAGGACCTCTTCGATCGTGGTCTCTGGGATGAGGAC 758088 Query 113076 ATGA---AGGATCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCC 113131 |||| || | |||| || | | ||| | || ||| ||||| || ||||| Sbjct 758089 ATGAAGCAGCAGCTCATTGCCCACAACGGAAGTGTC----CAATATATTAGCGAAATTCC 758144 Query 113132 AGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGA 113191 | || | ||| || | || || |||||||| |||||| |||| | ||||||| Sbjct 758145 TAACGACTTGAAGGAGCTCTATAAAACCGTTTGGGAGATCAAGCAGAAGAACATCATTGA 758204 Query 113192 CATGGCCGCAGATCGTGGTCGCTTCATTGATCA 113224 ||||| || || || || |||||| || || Sbjct 758205 TATGGCGGCCGACCGAGGCGCCTTCATCGACCA 758237 >seq12 Length=4930710 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG---TTGATTTTCGCGAGCGAC 16114 ||| || |||||||| ||||||||||||||||| ||||| || |||| | || | Sbjct 3560519 TCCAACTGCATCAATTTCATCAATGAAGACGATACATGGCGCATGTTTTTTG---GCTGC 3560463 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 || ||||| || | || | |||| || ||||| || ||||| ||| |||| | | Sbjct 3560462 TTGGAAGAGCTCTCTTATCCTTCTGGCACCAACACCTACGAACATTTCCTCAAATTCGGA 3560403 Query 16175 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 | | || ||| ||||| || ||||| | ||| ||||| || |||| || | | || Sbjct 3560402 GCCTGATGCTTGTATGAAAGGAACATTCGCTTCCCCCGCTATCGCTCTAGCAATTAACGT 3560343 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAG 16264 || || ||||| || | ||| | ||||| Sbjct 3560342 TTTTCCTGTACCCGGTTCACCGGACAGGAG 3560313 >seq6 Length=1293593 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 171440 TACGAAGGCGCTACCGTCCTTGAAGC-ACAAAAGGGAGCGTATTATACACCAATTACAGC 171498 |||||||| |||||||| | ||| | | ||||||| | || | ||| ||| | | Sbjct 1201872 TACGAAGGAGCTACCGTTTTAGAACCCATAAAAGGGTACTACATAGA-ACCCATTTCGAC 1201814 Query 171499 TCTAGATTTTGAAGCACTGTACCCATCTATCATGATGGCACACAATCTGTGTTATTCATC 171558 || ||||||| | | |||||||||||||||||||| |||||||||||||| || || | Sbjct 1201813 GCTCGATTTTGCATCCCTGTACCCATCTATCATGATAGCACACAATCTGTGCTACTCCAC 1201754 Query 171559 GTATGTCA 171566 || |||| Sbjct 1201753 GTTGGTCA 1201746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742291370080