Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20coatneyi_20[genbank_20GCA_5F001680005.1_202016-07-06] 14 sequences; 27,685,530 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4 149 7e-31 seq13 100 3e-16 >seq4 Length=1862670 Score = 149 bits (164), Expect = 7e-31 Identities = 543/838 (65%), Gaps = 19/838 (2%) Strand=Plus/Minus Query 110374 CCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 ||||||||||| || || || || | ||| || | ||| ||||| | |||||| || | Sbjct 757382 CCCAAGTTCTTTTGGTTGGACTTCGCGTTACAAGAATCTTTATACAACATGTAGGGAACA 757323 Query 110434 CCAGTTTCCGTCTGTGACTTG--AGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTG 110491 || ||||| |||| |||| | |||||| ||||| ||| || |||||||| Sbjct 757322 CCCGTTTCTATCTG--ACTTTGCAAAATGGCAAACCATAGATCTTGCGCCAGGACAGTTT 757265 Query 110492 CGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACA 110551 || | | |||||| ||||| || || ||| | | || ||||||| || | Sbjct 757264 TTTTGCCCATACCTTCTTCCTCATATTTTAAGTATAGCTTTTCGAATTCCTCACCCCAAG 757205 Query 110552 CATCAGAAAGACCCTTCGCCTTG--TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTC 110609 ||| | ||||| | || ||||| || | | | |||||| | || | Sbjct 757204 ACTCACTTA-ACCCTGGACATTCATTCGGG-CACATCAAAGTCCAATTCTGATTTTCTTT 757147 Query 110610 AACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAG 110668 || ||||||||||| |||||||| | ||| | || |||||||||| | || || Sbjct 757146 TACTCTCTTCATGAAAAGGTCAGGGACCCATACAGCATAGAAAAGGTCTCTAGCTCTTAG 757087 Query 110669 --CCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCA 110726 |||||| || || || || || || || | ||| || | ||||| |||||||| Sbjct 757086 TTCCTCTT--TC-CCGTGATTTTTACGAAGGTCTAGAAATTCGAAAATATCTGAGTGCCA 757030 Query 110727 TGGTTCGAGATAGACAGCGATGGATCCCTTACGACGACCCGCC----TGGTTAACATAGC 110782 |||||||| || || || | ||||||||| | | ||||| |||| ||||| | Sbjct 757029 TGGTTCGATGTACACTGCAAAGGATCCCTTTCT-CTTTCCGCCACCTTGGTCTACATATC 756971 Query 110783 GTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTAC 110842 ||||| ||||||| ||||| ||||| || | | || | |||| || || || | Sbjct 756970 TAGCTGTATCATTGAACACCCTCAGCATTGGCACTAACCCGTTGGATATTCCGTTGGTTC 756911 Query 110843 CCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCC 110902 | ||||| ||| || | | | ||| || || | | ||||| ||||| ||| Sbjct 756910 CTCTAATGTAGGAGTTTTGTCCTCTAATATCCTGTACCGCTACTCCAATTCCACCAGCCG 756851 Query 110903 ACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCT 110962 || ||||| | || |||| | | || || | ||||||| ||||||||||| || | Sbjct 756850 TTTTGCTAATCAGGGCGCACTGTTTCAGCGTCTCGAAAATACCTTCAATCGAATCAGCTT 756791 Query 110963 TGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTG 111022 | | | || || || || ||||| || || | ||||| || | |||||| | | Sbjct 756790 TCATACAGAGAAGGAAACAGGACGACATTTGCGGTCTGGGCGTCCCAGAATTGAACAACG 756731 Query 111023 TAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGG 111082 ||||||| || || | || ||| ||||| | || || || || || Sbjct 756730 TAGGTGTTGCGTGTGTAAAATATTTTTGAGACATAAGATGATACGTCTCTAGCGCTTTTT 756671 Query 111083 GTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGA 111142 | ||| | ||| || ||||||| |||| ||| | || || ||| || |||||| Sbjct 756670 CCAGATCCCCAATGTGGATGCCAATGGATACTCTCATCAGCAGATGTTGTGGTCTTTCGA 756611 Query 111143 TTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 | | |||||||| | || | ||||| | | || | ||||||| |||||||| Sbjct 756610 TAATCTTTCCATTTATTCGAAGGAGGTAGGACCTTTCCAAAGTCTTGAACCCAAAGTA 756553 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 168406 GATGAGTCCCTCACGTTTTTACACTTACCACGGAGTGGAAATACCCCATAATGATCTCTA 168465 |||| |||||||||||| | || || | || || |||||||| | |||||| Sbjct 935947 GATGCATCCCTCACGTTTAGTAATTTTCCCTTCAAGGGGAACACCCCATACTTATCTCTC 935888 Query 168466 CCCACGACGGAGAGACCAGCGACAGCGAGA-GTTTTCGCTGAATCACCCTCTGTCACGAT 168524 ||||| | ||| | ||||| | ||| || || || || ||||||||||| || | ||| Sbjct 935887 CCCACTATGGATAATCCAGCTA-AGCAGGATGTCTTAGCAGAATCACCCTCCGTAAGGAT 935829 Query 168525 GAGTGTACACTTTCCAGACTGTGC--CGTACCAGCTTTGTTCGCATCGTCCAATTTGGGG 168582 ||||||||| ||| |||||||| | || || | ||| ||||| |||| ||| || Sbjct 935828 GAGTGTACA--ATCCTGACTGTGCTTACTTCCCGCATCGTTTGCATCCTCCAGTTTTGGT 935771 Query 168583 ATACCA 168588 || ||| Sbjct 935770 ATTCCA 935765 >seq13 Length=1997354 Score = 100 bits (110), Expect = 3e-16 Identities = 375/573 (65%), Gaps = 14/573 (2%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || |||||||| ||| || ||||| ||||||||| |||||| ||| | | Sbjct 1648196 TGCAGACCTTCATCTCGACTAATTAGCTCGTTACTGAAGGTGAGTCCATGCAACT-TGTT 1648138 Query 119568 CTT-TTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 || ||||| | |||||| || ||||| ||||||||| ||| | ||| ||||||||||| Sbjct 1648137 CTGCTTCTTAAACCAAAAAATAGCACAGAAACTTCCACTAAATAGGATACCCTCCACACA 1648078 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCC 119685 ||| || | || | || ||||| | || | | | || | ||||||| |||| Sbjct 1648077 GGCATTGGCTACTATCCTTTCTGCAAAGGAGTTGGTA-TCGTTTATCCACTTGGCTGCCC 1648019 Query 119686 AGTTGGCCTTACGCTCTA-TGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGC-TTCTT 119743 | || || || | ||| ||| | | ||| || || | ||||| | | ||||| Sbjct 1648018 ACAACGCTTTGTTCTTCACTGC-GGGAATATTTTCAATCGCGTGAAAAAGGTTCATTCTT 1647960 Query 119744 TTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCAT 119803 | | | | ||||| || || || || || | || ||||| || | | Sbjct 1647959 TCCTTCTCG-TCCTTTATGTAGTTGTCTATTAACAAGCTATACGTCTCTGAGTGGATATT 1647901 Query 119804 TTCATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTT--CGTCA 119861 |||| ||| ||| |||||| || || | ||||||||||| ||| | Sbjct 1647900 TTCAACAGCAATCTGGAAGGAGTAAAATTTCTTTGCCTCCGTAATTTGCACTTGGCGTAA 1647841 Query 119862 GCAAAATTG-TTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAA 119920 ||| ||| ||| | | |||||| || ||||||||||| | |||||||| || || Sbjct 1647840 --AAATTTGCTTGCTAA-ATTTTCCAACACAATTCCATCACTCGCTGCGAAGAAAGCCAA 1647784 Query 119921 GATGTACTTTATGAATTTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTT 119980 | | |||||||| | | |||||| || || | | ||| | || | || ||| | Sbjct 1647783 CACATGTTTTATGAAATGTTTTTCATTTTCATTTAATTTTTCGAAATCTTTCAAATCGCT 1647724 Query 119981 AGACAAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCCA 120040 ||||||||| | ||||||||||||||| ||| | || ||||| || | ||||| Sbjct 1647723 AGACAAGTCAATTTCTTCAGCTGTCCAGAAGGACGCTTCCGCTTTTTTGTAAAAATCCCA 1647664 Query 120041 AAGTTCAGGATACTTCAGGGGAAAAACGGTGAA 120073 | || |||||| | |||| | | |||||| Sbjct 1647663 CACGTCTGGATACAAAATGGGATACAAGGTGAA 1647631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975896929200